Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1701 ATGGACGATTGCAAAAAAAAAAAACGAACTAAATGTCTCATTGTATCTATAAATGATGCAGGGCCAGCAAGGTGCTACAGGCAAATTAAAAACAAACCATACCCGAAATCACGCTTCTGCCGTGGTGTTCCCGATCCCAAGATCAGAATTTATGATGTTGGGATGAAAAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGCTGGGAGAAAGAAAATGTTTCGAGTGAGGCACTGGAAGCTGCTAGGATTGCGTGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCATTCCACTTGAGGGTTAGGGTACATCCATTCCATGTTCTGAGGATCAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACAGGGATGAGAGGTGCCTTTGGAAAGCCCCAAGGAACTTGTGCTAGAGTGGCTATTGGACAGGTCCTCCTTTCTGTTCGCTGCAAGGATGCCAACAAGAATCATGCTCAGGAAGCTCTCCGTCGTGCTAAGTTCAAGTTCCCTGGCCGCCAAAAGATCATTGTCAGCAGAAAATGGGGCTTCACCAAGTTTAGCCGTGCTGACTATGTGAAGTTGAAGTCAGAGGGCAGAATCATGCCAGATGGTGTAAATGCCAAGCTTCTTGGATGCCATGGACCTTTATCTAATCGTCAGCCTGGAAGAGCCTTTCTGCACGCAACTGCTTAG 714 0.4566 MDDCKKKKRTKCLIVSINDAGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDANKNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYVKLKSEGRIMPDGVNAKLLGCHGPLSNRQPGRAFLHATA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1701 237 PANTHER 60S RIBOSOMAL PROTEIN L10 22 230 IPR001197 GO:0003735|GO:0005840|GO:0006412
Acco05g1701 237 SUPERFAMILY Ribosomal protein L16p/L10e 22 190 IPR036920 GO:0003735|GO:0005840|GO:0006412
Acco05g1701 237 FunFam 60S ribosomal protein L10 19 223 - -
Acco05g1701 237 CDD Ribosomal_L16_L10e 58 183 IPR016180 GO:0003735|GO:0005840|GO:0006412
Acco05g1701 237 Gene3D Ribosomal protein L10e/L16 20 234 IPR036920 GO:0003735|GO:0005840|GO:0006412
Acco05g1701 237 ProSitePatterns Ribosomal protein L10e signature. 125 146 IPR018255 GO:0003735|GO:0005840|GO:0006412
Acco05g1701 237 NCBIfam 50S ribosomal protein L16 22 191 IPR001197 GO:0003735|GO:0005840|GO:0006412
Acco05g1701 237 Pfam Ribosomal protein L16p/L10e 29 183 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1701 Acco-ChrAcco05 33338214 33339567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1701 22 237 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.037 1.67e-141 393