Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1683 ATGCGGTCGGTTTTGAATATGAGAGCTCTTTCCTACTTGTTCCTGATGCTTCTTATAGATCCGGGGTTGGTGGTGATTTCTGTGAACCCATCCCTGAATGACGACGTCCTGGGTCTGATAGTATTCAAAGCTGACATAAAAGATCCGAAGGGGAAACTGGTAAACTGGAATGAAGATGATGAGACTTGCTGTGGTTGGGTCGGTGTGAAATGCAACCCTAGATCCAACAGAGTCGTCGAGCTTAACCTTGATGGGTTATCTCTTTCGGGTCGGATAGGTCGAGGCCTCTTTCAGTTGCAATTTCTCCGCAAACTTTCTCTGGCGAAGAATAATCTCACCGGCAGTGTAAGCCCCAACATTGCTCGGCTTGACAACCTTCGAGTGATCGATTTGAGCGATAACAATCTCTCTGGCGAGCTTCCCGATGATATTTTCCGGCAATGTGGGTCTCTAAGGGCGATTTCATTAACGAGAAACAAGTTTACGGGGGAGATTCCCACTAGCTTGAGCTCATGTTCGGCTCTTGCTGCAATTGACCTCTCGTTTAACCAGTTTTCGGGTCCTATTCCATCTGGTATCTGGACTTTGAGTGGACTAAGGTCACTGGTTTTGTCGGATAATTTGTTGGAAGGTGAGATTCCAAAGACCACTGAAGGATTGAAGAATTTGCGAATGATCAACTTGGCCAGAAATCAGTTGTCTGGGAAGATCCCTGATGGGTTTGGAAGTTGCTTGCTTTTGAGGTCTATTGATCTCAGTGAGAATTCTCTTTCTGGTAGCCTTCCGGAGGATATGAAGCAGCTCACATTGTGTAGTTATCTAAGTGTGAGTGGAAATGTTTTTTCAGGTGAGATTCCTGAATGGATTGGGGAAATGAAAAATTTGGAGGCATTGGACGTTTCTCTGAATAGATTTTCAGGTAAGGTGCCAAGCTCTATTGGAAATCTTCAGTCATTGAAGGCAATGAACTTTTCTGGAAATGGTTTTTCTGGTAACCTGCCAGAATCTATGATAAATTGCACAAACCTTTTAGCCTTGGATGTTAGTCAGAATTCAATGTCAGGAGATCTTCCCTCGTGGATTTTTAAGTCAGATTTGCAGAAAGTTTTGGTATCAGAAAAGAAATTGCGTGGAGGTCTGAAAAATTCTCTATATTCCTTAGAGGCAGTTGCTGTTCAAAGTCTTCAAGTTTTGGATTTATCTGACAATGCATTTTCTGGAGAAATTACATCTGATATCTCAGTCCTGAGCAGCTTGAAGCACTTGAATTTATCAAAGAACACTCTGAGTGGTCCTATACCAGATGCCATTGGAGAATTGAAGTCCCTGAATAGTCTTGATTTGAGTGAGAACTGGCTAAATGGAAGTATATCTATGGAAATAGGAGGAGCTGTATCTTTGAAAGAACTGAGGTTGAGGAAAAACCATCTAGCGGGAGGCATTCCAACCTCAATTGGCAACTGCACATCTTTGTCGACTTTAATTCTATCACAGAACAGCTTGACTGGGTCAATACCTGCAGTAATTGCTAAACTGACTAATTTACAAGTTGTTGACTTGTCTTTGAACAATTTTACTGGAACCCTTCCCAAGCAATTGGCCAATCTGCCCAATCTTCTTTCCTTTAATATATCTCATAACAAACTAAAGGGCGAACTGCCAACTGGCTCCTTTTTCAATACCATTTCGCCTTCCTATCTTACTGGCAATCCATCTCTTTGTGGTGCCGCTGTCAAGAAATCATGCCCTTCTGTCCTTCCAAAGCCTATAGTCCTAAATCCAAACACCACCACTTCTGATTATGCTCCAGGTTCATTACCTCCCAATGTTGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGTTGTCATTGTAATTGGGGTCATTGCCATCACTGTTCTTAATCTCCGTGTTCGGTCCTCTGCATATAATGCTCCAGCTGCCCTCACATTTTCTGCAGGGGAAGAATTTAGCCATTCCCCAACTACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCTGGTGAGCCAGACTTTAGCGCAGGGGCACATGCTTTGCTTAACAAGGATTGTGAACTTGGGCGTGGCGGGTTTGGAGCAGTGTACCAAACAGTTCTTAGAGATGGTCATGCGGTTGCAATCAAGAAGCTCACTGTGTCAAGTCTTGTCAAGTCTCAGGAAGATTTTGAAAGAGAAGTGAAGAAACTAGGAAAAGTCAGACACCAAAATCTTGTGGCTCTTGAAGGTTACTATTGGACCCCATCCCTACAGCTCCTCATATACGAGTTTGTTTCTGGTGGCAGTCTGTATAAGCACCTCCATGATGGATCAGGTGGAAATTTCCTCTCTTGGAATGAGAGGTTTAATATAATTCTTGGCACAGCTAAGGCCTTGGCTCATTTGCATCACATGAGCATTATCCACTACAACATCAAGTCCACTAATGTCCTAATTGATAGCTATGGGGAAGCTAAAGTGGGTGACTTCGGCCTAGCAAGATTACTACCAATGCTTGACCGTTATGTGTTGAGCAGCAAAATTCAAAGTGCTCTTGGCTACATGGCTCCAGAATTTGCCTGCCGTACTGTGAAGATAACAGAGAAATGTGATGTATATGGATTTGGAGTTTTGGTCTTGGAAGTGGTCACAGGGAAGAGGCCAGTTGAATACATGGAGGACGATGTGGTGGTGCTCTGTGACATGGTCAGAGGGGCTTTGGAAGAAGGAAGGGTAGAAGAATGTATCGACACGAGGCTGCAGGGAAAGTTCCCGGCCGAAGAAGCCATTCCTGTGATGAAACTAGGTTTAATATGTACTTCACAAGTGCCCTCGAACCGGCCAGACATGGGAGAGGTAGTCAACATATTGGAGCTAATTAGATGTCCCTCGGAGGGACAAGAGGAGCTTGGATGA 2934 0.4387 MRSVLNMRALSYLFLMLLIDPGLVVISVNPSLNDDVLGLIVFKADIKDPKGKLVNWNEDDETCCGWVGVKCNPRSNRVVELNLDGLSLSGRIGRGLFQLQFLRKLSLAKNNLTGSVSPNIARLDNLRVIDLSDNNLSGELPDDIFRQCGSLRAISLTRNKFTGEIPTSLSSCSALAAIDLSFNQFSGPIPSGIWTLSGLRSLVLSDNLLEGEIPKTTEGLKNLRMINLARNQLSGKIPDGFGSCLLLRSIDLSENSLSGSLPEDMKQLTLCSYLSVSGNVFSGEIPEWIGEMKNLEALDVSLNRFSGKVPSSIGNLQSLKAMNFSGNGFSGNLPESMINCTNLLALDVSQNSMSGDLPSWIFKSDLQKVLVSEKKLRGGLKNSLYSLEAVAVQSLQVLDLSDNAFSGEITSDISVLSSLKHLNLSKNTLSGPIPDAIGELKSLNSLDLSENWLNGSISMEIGGAVSLKELRLRKNHLAGGIPTSIGNCTSLSTLILSQNSLTGSIPAVIAKLTNLQVVDLSLNNFTGTLPKQLANLPNLLSFNISHNKLKGELPTGSFFNTISPSYLTGNPSLCGAAVKKSCPSVLPKPIVLNPNTTTSDYAPGSLPPNVGHKRIILSISALIAIGAAVVIVIGVIAITVLNLRVRSSAYNAPAALTFSAGEEFSHSPTTDANSGKLVMFSGEPDFSAGAHALLNKDCELGRGGFGAVYQTVLRDGHAVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHDGSGGNFLSWNERFNIILGTAKALAHLHHMSIIHYNIKSTNVLIDSYGEAKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDTRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1683 977 CDD STKc_IRAK 700 966 - -
Acco05g1683 977 Pfam Protein tyrosine and serine/threonine kinase 696 962 IPR001245 GO:0004672|GO:0006468
Acco05g1683 977 Coils Coil 976 977 - -
Acco05g1683 977 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Acco05g1683 977 SUPERFAMILY Protein kinase-like (PK-like) 698 967 IPR011009 -
Acco05g1683 977 SUPERFAMILY RNI-like 262 572 - -
Acco05g1683 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 311 - -
Acco05g1683 977 Gene3D Ribonuclease Inhibitor 308 586 IPR032675 -
Acco05g1683 977 ProSiteProfiles Protein kinase domain profile. 694 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1683 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 688 770 - -
Acco05g1683 977 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 312 586 - -
Acco05g1683 977 Gene3D Ribonuclease Inhibitor 33 307 IPR032675 -
Acco05g1683 977 ProSitePatterns Protein kinases ATP-binding region signature. 700 723 IPR017441 GO:0005524
Acco05g1683 977 Gene3D Transferase(Phosphotransferase) domain 1 771 975 - -
Acco05g1683 977 SMART LRR_typ_2 123 147 IPR003591 -
Acco05g1683 977 SMART LRR_typ_2 196 219 IPR003591 -
Acco05g1683 977 SMART LRR_typ_2 292 316 IPR003591 -
Acco05g1683 977 SMART LRR_typ_2 536 560 IPR003591 -
Acco05g1683 977 SMART LRR_typ_2 416 440 IPR003591 -
Acco05g1683 977 SMART LRR_typ_2 220 244 IPR003591 -
Acco05g1683 977 SMART LRR_typ_2 512 535 IPR003591 -
Acco05g1683 977 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Acco05g1683 977 Pfam Leucine rich repeat 466 524 IPR001611 GO:0005515
Acco05g1683 977 Pfam Leucine rich repeat 394 451 IPR001611 GO:0005515
Acco05g1683 977 Gene3D Phosphorylase Kinase; domain 1 687 770 - -
Acco05g1683 977 SUPERFAMILY L domain-like 48 374 - -
Acco05g1683 977 PANTHER LEUCINE RICH REPEAT KINASE 2 220 964 - -
Acco05g1683 977 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 771 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1683 Acco-ChrAcco05 33167489 33170959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1683 11 977 Receptor kinase-like Gene Family AT3G56370 67.938 0.0 1280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Acco05g1683 PK_Tyr_Ser-Thr 1.8e-41 CL0016