Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1680 ATGTCGGAGGAGGAAATTGGTCTTGCTCCAGATCAGAGGATCGATAACGGTCTCAATTCACCACTAGTGTTCCAAGAAGACCCCTTGCGTTACAGCTGCGGTGCTCCACAACGTCGGGTCGGGGACCCAGGTTCGAAAACGAGGGAGCTTGTCGGTTTCATTGATGAAAAGATGTTCACTGTGGACCGTGACCGTTTTTTCGCGGCTCGGGGATTGGAGTTCCGTCGTAATGTTTTCGGGGATTGCTCGGACCAGCGGAACCCACCGGACGCCCGGAATTGGAATGGGAACGGGAGCACTGCAACCCCGAGCGGCGATGAATCGGACGGCGAGGATGATGAAGACGATGAGGAAGATGACGACGACGACGATATTGAGGGCGGCGCTGAGGTGGAAAGATTAGTCGGTGTTAACGATGCTAGCAAAGGGAATTCTAATCCCAATTCAGTTAACGATATTAACATTAACAGCATAAGTGGTGGTAGCCTTGCTAATGCTGCAGATGGAATATCAAACGGAAAAGCTCAACATCATTCGTCTTACGGATCGAGTAGAGAGGTAGTGGGGAAGGATGGAGAAATTGGGCCGACGCAGAATAATTCAGGGGGTAACGACGATCAGCAAGAAAGGTTAGATAAATCTCAGAGTGCGGTCACGATTGCCGAAACTGATTGTGAGGACTATTATTCACACTATCTTCAAGGCACGGAGGGCTCAGCTTCTGTGCAGAAAGCCGTAGCAGTGGAAAATGATTGCGGATTTAGCGGAAGAAAGGATGTTATCTATTCAAGCGAGTCAGTCGAATCATTGAGGGCAGTGCTTTCAGATCCTATAACGGGAGCTCTTATGGATGATGCAATGATATTGCCTTGTGGGCATTCCTTCGGTGGAGGAGGAATACAGCATGTTATTAGAATGAAAGCTTGTTCCACTTGTTCCCAACCCATATCTGAGGAATCGATATCTCCAAATCTATCGCTTAGAGTTGCTGTGCAGGCATACCGTAGGGAAGAGGAGTCACAGTTTCACTGGTCATCAAAAAGAAGAAGGGAAAGATTTGATCAGGGTGGTTATGGTGATTCAACAGTTATGGAACAACCAAGATGCAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGGGTCATCATAAAGGGGAACAAGAGGACGCCTCAGCGTTTTGTTGGGAGGGAAGCTATTGTAACAACACAATGCCTAAATGGATGGTATGTGGTAAAGACATTGGACAATGCGGAGAGCGTAAAATTGCAGTATCGCTCGCTTGCTAAGGTTTCAGATGACCCTTCAAAACCAGCCTCCAGCAAGGGGGCACCTCATTGGCTTTAA 1347 0.4803 MSEEEIGLAPDQRIDNGLNSPLVFQEDPLRYSCGAPQRRVGDPGSKTRELVGFIDEKMFTVDRDRFFAARGLEFRRNVFGDCSDQRNPPDARNWNGNGSTATPSGDESDGEDDEDDEEDDDDDDIEGGAEVERLVGVNDASKGNSNPNSVNDININSISGGSLANAADGISNGKAQHHSSYGSSREVVGKDGEIGPTQNNSGGNDDQQERLDKSQSAVTIAETDCEDYYSHYLQGTEGSASVQKAVAVENDCGFSGRKDVIYSSESVESLRAVLSDPITGALMDDAMILPCGHSFGGGGIQHVIRMKACSTCSQPISEESISPNLSLRVAVQAYRREEESQFHWSSKRRRERFDQGGYGDSTVMEQPRCRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPASSKGAPHWL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1680 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 339 IPR013083 -
Acco05g1680 448 ProSiteProfiles U-box domain profile. 269 341 IPR003613 GO:0004842|GO:0016567
Acco05g1680 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 3 442 - -
Acco05g1680 448 MobiDBLite consensus disorder prediction 1 20 - -
Acco05g1680 448 MobiDBLite consensus disorder prediction 88 105 - -
Acco05g1680 448 SUPERFAMILY RING/U-box 265 339 - -
Acco05g1680 448 MobiDBLite consensus disorder prediction 79 125 - -
Acco05g1680 448 MobiDBLite consensus disorder prediction 169 217 - -
Acco05g1680 448 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1680 Acco-ChrAcco05 33156685 33160687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1680 214 448 Plant U-box Gene Family AT5G05230 59.091 5.26e-89 273