Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1649 ATGCACACATGCAGGGAAAATTTTGAAGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATGTATCATCATCACAAATGGGAAGAAGACACATGTTGGGTCCTCCAGGAACCCTAAATACCATAACGCCATGTGCAGCATGTAAGCTCTTGAGGCGAAGATGTGCTCAGGAATGTCCCTTTTCTCCTTACTTTTCCCCTCATGAGCCCCAAAAATTTGCTTCTGTTCACAAGGTCTTTGGTGCTAGCAACGTCTCCAAGATGCTCATGGAGGTGCCAGAGAGTCAAAGAGCGGATGCAGCAAATAGTCTAGTGTATGAGGCAAATGTGAGGCTAAGAGACCCAGTTTATGGATGCATGGGTGCAATTTCTGCTTTGCAGCAACAAGTTCAATCTTTACAAGCTGAACTTAATGCTGTAAGGTCTGAAATACTAAAATACAAACTTAGGGAAGCTACTACTAACATCATTCCCTCCTCTCATCATCATCATATTCATCATCCTGTCCTACCTCCTAATTCCTCTCGGGCCGTCTCAATGGCCGATCCTTCACCGCCACCGCTTCCTCCTCCGCTGCCGCCTCCTTCTGCTTCTGATGATTCCCCTTCTTCCATGTATACCCAAGTCCAGCAGAGGCCTCCCACCAATTATACCACAATTTCATCAAGTGATAATATTTCCTATTTTGGTTAA 690 0.4507 MHTCRENFEEIGKKIKREGDVSSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRSEILKYKLREATTNIIPSSHHHHIHHPVLPPNSSRAVSMADPSPPPLPPPLPPPSASDDSPSSMYTQVQQRPPTNYTTISSSDNISYFG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1649 229 Pfam Lateral organ boundaries (LOB) domain 43 140 IPR004883 -
Acco05g1649 229 MobiDBLite consensus disorder prediction 15 34 - -
Acco05g1649 229 MobiDBLite consensus disorder prediction 157 229 - -
Acco05g1649 229 Coils Coil 122 149 - -
Acco05g1649 229 MobiDBLite consensus disorder prediction 198 229 - -
Acco05g1649 229 ProSiteProfiles LOB domain profile. 42 143 IPR004883 -
Acco05g1649 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 39 181 - -
Acco05g1649 229 MobiDBLite consensus disorder prediction 181 197 - -
Acco05g1649 229 PRINTS Wilm's tumour protein signature 180 194 - -
Acco05g1649 229 PRINTS Wilm's tumour protein signature 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1649 Acco-ChrAcco05 32862286 32863083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1649 28 229 AS2 family AT2G40470 70.588 1.32e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco05g1649 LOB 4.7e-41 No_clan