Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1621 ATGTCGCACAATAAGAGAAAGTTATATCAATCCAAGCATCCATTGGGATCTTACCCTTTTGAGGCATTTCTCTCTGGCTCATGGAAAGCTGTGGAGCACATAAAAATTGAGGGAGGAACTCCAACCCTGCATTTTATCGATAATCAGAAAAGAGTTTTGAAGAAAAGTCCTGGTCCAGACATTCGAATAAGGTCGAGGAAAGCTACTCTATCAGATTGCTCCTGTTTTCTAAGACCTGGAATTGATGTATGTGTGTCATCAGCCTCTCAACAGGATAATAGTTCAGCAAAAATTTGTCTTGAACCTGGATGGGTTGATGCTAAAATAAGATCTGTACAGAGAAAGCGCCACGTATCTGAGTGTTCATGTGAATATTTTGTCAACCTCTATGTTAATCAAGGTCGTTATGATCCAGAGAAGAGTATTCTTAGTGAGGAGACTAAAGTTGTTGGAATAAATCAAATATCCATCCTCCAGAAGCTTGATCACAATCCCTGTGAAGATCAGCGATATCGATGGGATTTATTTGAGGATTGCTTTAAAGCACGAGAGACTAAACTGTTTGCAGGAAAATTCTTTTCTGATTTTTCATGGTTAGTTGTTGCATCAGCTTTAAAGCATGTCTCATTCTGTGTAAGATCTGTAGAAGGCAAGATTGTGTATCAAATTTTGGGATGTGAACATTTTAGCTCTTCATTGAACTATAATTCTCTTAAACATGTAAATTTCAGATTAGACAATGGGATGCAATTACCTATTGTTTCTCTTGTCAATCCATCTGACAACAATAAGTCAGGCCAAGAGAAAAACGCATATGAAGTTGAGATCTCACCAGGGTCTTGCATTGAGGCATTACGCCGTTCCAAACGTCGTAACATAGAACCTGAACGTTATCTCGGTTTTGATGATGTCTCCAAGTTGAATTTTGGTCATGTTCGAACTGGCTTACCCAAGTCCAACACAAGATATGATGATTTGAAAGCTGATGTTGATATACTAGCAAATTGTCCAGGAAAGGACATAGATGCATGTCAAAATATTGAGAAGATAAATACCTGCCAGGAGGTCCTGGTGAACAACAGTTGGGTTGCAAGTGGGATGATGAAGTTAGAAAATGTCAATGAAAAAGGTCATGAGGCTCTACTTGTTAGGGATTCTCTGCCTGATGGAGGTGGTCTAGTAGCACTTGACCAATCTTTTCTCAACAACGATAGGACTGGAAATTCTAGACATGAAAATTATGTTTTTTCTGAATATAATCATCTGACTCATAGCCCTGAACTGAACAGGAAAATTGTCCATCCATGGGCATTTGAACCCTATGATCATCAATCAGAAGTTCCTGATCATCATCAGTCAGTTGTTAGGGATTCTCTGCCTGATGGAGGTGTTCCAGTAGCCCTTGACCATTCTTTTCTCAACACCGATAGTCGTGAAAATTCTTGGCATGAAAGTTGTGTTTTTTCTGAATATGATCATCTGATTCATAGCCCTGAACTGAACAGGAAAATTGTTGATCCATGGACATTTGAATCCTGTGATAAATCTTCTATTGGTTATTATTGTGGCACCTGTAGTGTCAACAGAGACGATCTTTCTGCTCTGGAAGACATGGATACTGAAATTGGATGGGAAGGGATACATTCCAATGAAGAAATTCAAGGGAAAAAATATCACCCACCAATGACAAGAAGTAAAACTCGTGAGCTAGAAAGACCCCACAAAGACAGATCCTTAAGTGATGCTGAAAAGTCTGCAAAAGAGATCGGTGATAAAACTTCTGAATGTTATGATTTTGGTACCTGTAATGTCCAGAAGAAGGATTTACCTGGCCTGCAGGACATGGATTTTGAAAATAGACAGGAAGGGGTACATTCTGATAAAGAAATTCAGGGGAAAAAATATCACCCACCAATGACAAGAAGTAAAACTCGTGTGCTGGAAAAACCCTACAAAGACAGATCCTTAAGTGGTGCTGAAAACTCTGCAAAAGAGATTGGTGATAAATCTTCTGGATGTTATGATTTTGGTACCTGTAATGTCCAGAAGAAGGATTTACCTGGTCTGCAGGACATGGATTCTGAAAATAGACAGGAAGGGGCACATTCTGATAGAGAAATTCAAGGGAAAAAATATCACCCACCAATGGCAAGAAGTAAAACTTGTGAGCTGGAAAGACCCCACAAAGACAGATCCTTAAGTGATGCTGAAAAGTCTGCAAAAGAGATCGGTGATAAAACTTCTGAATGTTATGATTTTGGTACCTGTAATGTCCAGAAGAAGGATTTACCTGGCCTGCAGGACATGGATTTTGAAAATAGACAGGAAGGGGTACATTCTGATAAAGAAATTCAGGGGAAAAAATATCACCCACCAATGACAAGAAGTAAAACCCATGAGCTAGAAAGACCCTACAAAGACAGATCCTTAGGTGATGCTGAAAATTCTGCACAAGAGGTTGGTGATAAATCTTCTGGATGTTATGATTTTGGTACCTGTAATGTCCAGAAGAAGGATTTACCTGGCCTGCAGGACATGGATGCTGAAAATAGACAGGAAGGGATGCATTCCGAGAAAAAAATTCAAGGGAAAAGTTATGACGCACCAATGACAAGAAGTAAAACTTGTGGGGAAGAGAGAACCTACAAAGACAGATCCTTAAGTGATGCTGGAAATTCAGCAAAAGAGACTGGTGATAAATCTTCTGGATGTTATTATTTTGGTACCTCTAATGTGCAGAGGAAGGATTTATCTGGTCTGGAGGACATGGATATTGAAAATAGATGGGAAGGGATTTGTTCCCATAAAGAAGTTCAAGGGAAAAAATATCATTCACCAATGACGAGAAGTAAAAGTCACTGGGAAGAAAGAACTTACAGAAACAGATCCTCAAGTGAAGCTGCCTACAAGGAATTGATAGATTCGTACTTAAAGAATGTTGACACCACACTAACTAAGGAGGAGCCGCCTATAGCCGACCAGTGGGTAGAATTTAAGACAAATAACTATGGGCAAAACAAGGGAGCAGAAGCTGATGAAGAAGTTTCTGAAATTGATATGTTGTGGAAAGAAATGGAAGTTGCATTAGCATCATTTTATGTTTTTGATAACACAGAGGGTTCAAAGGCTGTAGTCTCTTTGGAGACTGAGGAGAATTCTGACAAACTTTGTCAACACGAGTTTAGATTAAATGAAGAAATTGGGCTTTACTGCTGTAGATGTGGCTTTGTGAAGACAGAGATAAAAGACATTTCACCACCCTTTGCGCAGAACTTGCGATGGCAACAGGATGAAAGGCAGTGTGATGCTGGAAATTCGGAGGCAAAGGCTGATGAGAATGATAGTTTACATCTTTTGTCAGATCACACTTTAACCAATATGCCTGCATCTGAAGAAAATAATATCTGGGGAATGATCCCCAAACTTACTTGTAAGTTGCATGTCCACCAGAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTTCTGGATCGTTGCAACCAGCATCTATGAGGGCTGCATCTAAAAGATTAGGTGGCTGTGTGATATCTCATTCACCTGGAGCTGGAAAAACTTTCCTAATTATTGCATTTCTCGCGAGCTACTTGAAGGTTTTCCCAGGGAAAAGGCCTTTGGTCCTTGCTCCAAAGACAACACTTTATACATGGTATAAAGAATTTATCAAATGGGAAACTCCTATACCTGTGTATCTGATCCAATCTCGACGTAGACTTGGAGTGTGCAAGGAGAAACCAGTGGTTATTCCTGGTGTTCCAAAGCCCACTGTAGATGTCAGGCATCTTTTGGACTCTCTGGAAAAAATACAGAAGTGGCATTCACACCCTAGCGTTCTAGTCATGAGTTATAGTTACTTTTTGAGGCTGATGGAAGATAATTCAAAGTTTTCGCACCGAAAGTATATGGCTGAAGTCTTGAGGAAAAGTCCAGGGGTTCTTATTCTAGATGAAGGGCACAATCCTAGAAGTACAGAATCATGTTTGAGGAAAGCCTTAATGAAAGTAGAGACGGAATTGAGAATACTACTTTCAGGTACATTGTTTCAGAACAATTTCTGTGAGTACTTCAACACTCTCTGCTTGGCAAGGCCAAGATTTATTCATGAAGTTCTGAGAGAATTAGACCCCGAATACAAGGGGGATGAAGGTAGAGCTGGAAAAAAACCAAACTTCATGGAAAGACGGGCAAGAAAATTCTTCTTAGATAAAATTGCAAAAAAAATAGACTCTGACGATAATTATGATGAGAGGCTGCAAGGTCTAAACATGTTAAGAAAGATAACAAATGGCTTTATAGATGTTTATGACGGTGGAAGTTCTGATAATCTTCCTGGTTTGCATGTTTATACTTTGTTAGTGAATATTACTGGTTTTCAAGAAAAGATTTTTCGGGCACTCTATGACAAAGTATCCGACTCCAGATATCCTCTGGAGGTGGAGCTTTTGGTAACCCTTGGAGCAATACATCCATGGCTAATCAAAACGGCTGCATTCTCTGATAAGTTTTTAACTGAAGCTCAACTGAGTGAGCTGGAAAAATGCAAGTTTGATTTGAAGATGGGACCAAAAGTAAGGTTTGTTTTGAGCCTTGTGTATCGTGTTGTCAAGGAGGAAAAGATTCTTGTCTTCTTCCACTACATTGCACCTATGAGATTGTTCGTAGAACTATTCGAGAAGTTCTTCGGATGGCAGAGTGGTCGTGAAGTTTTGGTACTTAGTGGGGAACAAGATCTCTTTGAACGTGGGAGAGTGATTGATAAATTTGAGGAGCCTAGAGGAGCATCAAAGATACTCCTTGCTTCAATTACAGCCTGCTCTGAAGGCATTAGTCTGACCGCCGCTTCCCGTGTGATTTTGTTAGAATCAGAGTGGAATCCATCAAGGACAAGGCAAGCTATTGCACGTGCCTTTCGCCCTGGTCAGCAGAGGATTGTGTATGTGTATCAGCTTCTGCTGACAGACACAATGGAGGAAAAGAAGTACTGCAAAACGACTCGGAAAGAGCGAGTTTCAAGGATGATTTTTAGTGAGGATTTTGTGGAGGGTCAGTCCCAATGGCAAGCAGAAAAGCTCGAAGACGATATCCTTCGAGAAATGATCGCAGAAGACAAGTCCAAAATATTCCATATGATAATGAAAGATGAGAAGGCTTCAACCAACTGA 5178 0.3986 MSHNKRKLYQSKHPLGSYPFEAFLSGSWKAVEHIKIEGGTPTLHFIDNQKRVLKKSPGPDIRIRSRKATLSDCSCFLRPGIDVCVSSASQQDNSSAKICLEPGWVDAKIRSVQRKRHVSECSCEYFVNLYVNQGRYDPEKSILSEETKVVGINQISILQKLDHNPCEDQRYRWDLFEDCFKARETKLFAGKFFSDFSWLVVASALKHVSFCVRSVEGKIVYQILGCEHFSSSLNYNSLKHVNFRLDNGMQLPIVSLVNPSDNNKSGQEKNAYEVEISPGSCIEALRRSKRRNIEPERYLGFDDVSKLNFGHVRTGLPKSNTRYDDLKADVDILANCPGKDIDACQNIEKINTCQEVLVNNSWVASGMMKLENVNEKGHEALLVRDSLPDGGGLVALDQSFLNNDRTGNSRHENYVFSEYNHLTHSPELNRKIVHPWAFEPYDHQSEVPDHHQSVVRDSLPDGGVPVALDHSFLNTDSRENSWHESCVFSEYDHLIHSPELNRKIVDPWTFESCDKSSIGYYCGTCSVNRDDLSALEDMDTEIGWEGIHSNEEIQGKKYHPPMTRSKTRELERPHKDRSLSDAEKSAKEIGDKTSECYDFGTCNVQKKDLPGLQDMDFENRQEGVHSDKEIQGKKYHPPMTRSKTRVLEKPYKDRSLSGAENSAKEIGDKSSGCYDFGTCNVQKKDLPGLQDMDSENRQEGAHSDREIQGKKYHPPMARSKTCELERPHKDRSLSDAEKSAKEIGDKTSECYDFGTCNVQKKDLPGLQDMDFENRQEGVHSDKEIQGKKYHPPMTRSKTHELERPYKDRSLGDAENSAQEVGDKSSGCYDFGTCNVQKKDLPGLQDMDAENRQEGMHSEKKIQGKSYDAPMTRSKTCGEERTYKDRSLSDAGNSAKETGDKSSGCYYFGTSNVQRKDLSGLEDMDIENRWEGICSHKEVQGKKYHSPMTRSKSHWEERTYRNRSSSEAAYKELIDSYLKNVDTTLTKEEPPIADQWVEFKTNNYGQNKGAEADEEVSEIDMLWKEMEVALASFYVFDNTEGSKAVVSLETEENSDKLCQHEFRLNEEIGLYCCRCGFVKTEIKDISPPFAQNLRWQQDERQCDAGNSEAKADENDSLHLLSDHTLTNMPASEENNIWGMIPKLTCKLHVHQKKAFEFLWKNISGSLQPASMRAASKRLGGCVISHSPGAGKTFLIIAFLASYLKVFPGKRPLVLAPKTTLYTWYKEFIKWETPIPVYLIQSRRRLGVCKEKPVVIPGVPKPTVDVRHLLDSLEKIQKWHSHPSVLVMSYSYFLRLMEDNSKFSHRKYMAEVLRKSPGVLILDEGHNPRSTESCLRKALMKVETELRILLSGTLFQNNFCEYFNTLCLARPRFIHEVLRELDPEYKGDEGRAGKKPNFMERRARKFFLDKIAKKIDSDDNYDERLQGLNMLRKITNGFIDVYDGGSSDNLPGLHVYTLLVNITGFQEKIFRALYDKVSDSRYPLEVELLVTLGAIHPWLIKTAAFSDKFLTEAQLSELEKCKFDLKMGPKVRFVLSLVYRVVKEEKILVFFHYIAPMRLFVELFEKFFGWQSGREVLVLSGEQDLFERGRVIDKFEEPRGASKILLASITACSEGISLTAASRVILLESEWNPSRTRQAIARAFRPGQQRIVYVYQLLLTDTMEEKKYCKTTRKERVSRMIFSEDFVEGQSQWQAEKLEDDILREMIAEDKSKIFHMIMKDEKASTN 1725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1621 1725 MobiDBLite consensus disorder prediction 622 659 - -
Acco05g1621 1725 Gene3D - 1449 1725 IPR027417 -
Acco05g1621 1725 Pfam SNF2-related domain 1142 1374 IPR000330 GO:0005524|GO:0140658
Acco05g1621 1725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1171 1370 IPR014001 -
Acco05g1621 1725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1446 1712 IPR027417 -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 556 587 - -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 622 667 - -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 776 823 - -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 776 813 - -
Acco05g1621 1725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1532 1692 IPR001650 -
Acco05g1621 1725 CDD SF2_C_SNF 1520 1656 - -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 852 898 - -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 873 890 - -
Acco05g1621 1725 SMART ultradead3 1142 1375 IPR014001 -
Acco05g1621 1725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1136 1372 IPR027417 -
Acco05g1621 1725 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 701 1724 IPR044567 GO:0080188
Acco05g1621 1725 Gene3D - 1116 1403 IPR038718 -
Acco05g1621 1725 SMART helicmild6 1556 1645 IPR001650 -
Acco05g1621 1725 Pfam Helicase conserved C-terminal domain 1529 1644 IPR001650 -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 688 741 - -
Acco05g1621 1725 MobiDBLite consensus disorder prediction 685 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1621 Acco-ChrAcco05 32618045 32624352 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1621 1543 1675 RAD5 or RAD16-like Gene Family AT5G43530 36.090 6.07e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco05g1621 SNF2_N 3.2e-16 CL0023