Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1618 ATGGAAGATTGCTGTGATCTTGAAGTGGATATAAATGGACAAGAGACCTTCCTGGTGAACAAAGATTATTACAAGATTCTGGAAGTAGATTATGATGCTAATCTTGCTGTTAATCTTGCTAAAAGGGGAAACCTTCCTGGTGCAGAAGACCTGTATAAGGCAGCTGCAGAGCTTGCTGCAGAATCTCCACAAGGAATACTTCGCACTCCTGAAACTGTTGCTAAATTTCAGGTAAACTTTTGCATTGGGCAGACACCACCATTATTACTGTACTTTGGAACTCTTTTAACCAGGGGAAAGCTTAATGCTTTTGAATCCTTGGAACTGTTTAGGCTTGTGGTAAATCAAAACAAAAAAAATCTTCTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAACTTGGTGACCTTGTGAAGCTGCATATTGCGTTTTGTGTCTTTGCTGCTATTGCTCCTCCAGTTGTTTTTCATGGAAAGTCTTTAACAAAGGAGTATGAATGTCTTGGCTTAATTTTGAAAACCCTAGCGAACTGGAAGAGCGCAACAAAATCAACCGAAGGCAACAGCAGCATAACGCCGGAGAGGTTTGAAGCCATGGACTCTGACTTTCCCAACAAAGCCTTAACGAAAACGCGATTTTCTGAGCTGAACCCGCAACTTTCTGAGCCTGTCCTCGAAGCTCTATCAGAGTCTGGCTTCGAGTTTTGCACGCCGGTTCAAGCCGCTACAATACCTTTGCTATGCAGTTTTAAGGACGTGGCCATCGACGCTGCCACCGGTTCAGGCAAGACGCTGGCATTTGTCGTTCCACTTGTTGAGATTCTCCGCCGGTCGTGTTCCAATCCCAAGCCTCATCAGGTATTTGGAATAATTATATCTCCTACAAGGGAGCTGTCATCCCAAATATACCATGTTGCACAACCTTTCATTAAAACTTTAGCTAATGTTAAGTCCGTGCTCCTTGTTGGTGGAGCAGACGTAAAAGCAGATATGGAGAAAATTGAGGAAGGAGCTAATATATTGATCGGCACACCTGGGCGGCTATATGACATAATGGATCGTATGGATATATTGGATTTTAAAAGCCTTGAGATTTTAATTTTAGATGAAGCTGATAGGCTCCTGGATATGGGATTCCAGAAGCAGATTAACTCCATTATATCTCTCCTGCCAAAGCTTCGCAGAACAGGTCTATTCTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCTGGGCTGAGGAACCCTGTGAGGGTTGAAGTTCGGGCAGAATCAAAATCAGTAAATGACCCTGCAGCATCACAGCAACCAACCTCTTCAAGGACGCCTGCAGGACTTCAAATTGAGTACATGGAATGTGGCGGTGAAAAGAAACCATCACAGCTTGTTGATATCTTAATGAAGAACCGCTCCAAAAAAATGATAATATACTTCATGACCTGTGCCTGTGTTGACTATTGGGGACTTGTCCTCCCACGCCTATCTGCTTTGAAAGGTTTCTCCTTGATCCCTCTTCATGGAAAGATGAAGCAGGCTGCTAGGGAGAAGGCATTGGCGTCTTTTACATCTCTTTCAAATGGAATACTTCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCTGGAGTTGATTGTATAGTGCAGTATGATCCCCCGCAAGATCCAAATGTTTTCATACATAGAGTTGGCCGAACTGCTCGTCTGGGTAAACAAGGACATGCTATTGTCTTCTTATTGCCAAAGGAAGAATCTTATGTGGAATTCCTGCGTGTAAGAAGGGTCCCCCTCCAAGAGAGAAGTTGCTCTAATGATGCATCTGATGTTGTTCCTGAGATTCGCTCTGCTGGAAAAAAAGATCGTGATGTAATGGAGAAAGGACTCAGGGCATTTGTTTCTTTTATCCGTGCTTATAAAGAGCATCACTGCTCCTATATTTTTAGATGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATTTGGCTTACTGCAGCTTCCTTCAATGTCAGAGTTAAAACAGCAGTCATTGTCCACAGAAGGTTTTGTACCAGTTGAAGGCATCAATTTGGAGGACATTAAGTACAGGGATAAATCTCGTGAAAAGCAAAGGAAGCAAAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGGCAAAGCCTCAGAAACCTAACAAAACCTCAAAAACTGCCCCTGTACCAAGGAAGAAAACAGCTAAACAGAGACGTTCTCAGCAGTCAGTTGAAGATGAAGAAGAGCTTACTCAAGAATATCGGCTGTGGAAAAAATTGAAAAAAGGAACTATAGATGAGGATGAGTATGCTAAATTAACAGGCACTGAAGAATTACTTTGA 2370 0.4274 MEDCCDLEVDINGQETFLVNKDYYKILEVDYDANLAVNLAKRGNLPGAEDLYKAAAELAAESPQGILRTPETVAKFQVNFCIGQTPPLLLYFGTLLTRGKLNAFESLELFRLVVNQNKKNLLENWLAEDKLECSEELGDLVKLHIAFCVFAAIAPPVVFHGKSLTKEYECLGLILKTLANWKSATKSTEGNSSITPERFEAMDSDFPNKALTKTRFSELNPQLSEPVLEALSESGFEFCTPVQAATIPLLCSFKDVAIDAATGSGKTLAFVVPLVEILRRSCSNPKPHQVFGIIISPTRELSSQIYHVAQPFIKTLANVKSVLLVGGADVKADMEKIEEGANILIGTPGRLYDIMDRMDILDFKSLEILILDEADRLLDMGFQKQINSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKSVNDPAASQQPTSSRTPAGLQIEYMECGGEKKPSQLVDILMKNRSKKMIIYFMTCACVDYWGLVLPRLSALKGFSLIPLHGKMKQAAREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLRVRRVPLQERSCSNDASDVVPEIRSAGKKDRDVMEKGLRAFVSFIRAYKEHHCSYIFRWKELEIGKLAMGFGLLQLPSMSELKQQSLSTEGFVPVEGINLEDIKYRDKSREKQRKQNLQAKKEAKEKEAKPQKPNKTSKTAPVPRKKTAKQRRSQQSVEDEEELTQEYRLWKKLKKGTIDEDEYAKLTGTEELL 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1618 789 PANTHER RNA HELICASE 203 717 - -
Acco05g1618 789 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 370 378 IPR000629 -
Acco05g1618 789 MobiDBLite consensus disorder prediction 701 759 - -
Acco05g1618 789 Coils Coil 703 725 - -
Acco05g1618 789 Pfam Domain of unknown function (DUF4217) 617 674 IPR025313 -
Acco05g1618 789 SMART ultradead3 235 434 IPR014001 -
Acco05g1618 789 Pfam DEAD/DEAH box helicase 240 413 IPR011545 GO:0003676|GO:0005524
Acco05g1618 789 MobiDBLite consensus disorder prediction 701 729 - -
Acco05g1618 789 Gene3D - 455 687 IPR027417 -
Acco05g1618 789 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 466 622 IPR001650 -
Acco05g1618 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 594 IPR027417 -
Acco05g1618 789 Gene3D - 181 427 IPR027417 -
Acco05g1618 789 Gene3D - 25 160 IPR012331 -
Acco05g1618 789 SUPERFAMILY ARM repeat 33 143 IPR016024 -
Acco05g1618 789 CDD SF2_C_DEAD 451 584 - -
Acco05g1618 789 CDD DEADc_DDX55 227 424 - -
Acco05g1618 789 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 247 424 IPR014001 -
Acco05g1618 789 SMART DUF4217_3 613 676 IPR025313 -
Acco05g1618 789 SMART helicmild6 490 575 IPR001650 -
Acco05g1618 789 Pfam Clathrin-H-link 52 95 - -
Acco05g1618 789 FunFam RNA helicase 210 427 - -
Acco05g1618 789 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 216 244 IPR014014 GO:0003724
Acco05g1618 789 Pfam Helicase conserved C-terminal domain 463 575 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1618 Acco-ChrAcco05 32581284 32593145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1618 218 589 Eukaryotic Initiation Factors Gene Family AT1G72730 30.027 1.82e-45 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1618 05 32581284 32593145 Acco05g1618 05 32581284 32593145 ECH