Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1617 ATGGGAGGCACTTCCCCTTGTGCTTCGTGCAAGTTGCTACGACGCCGTTGCGCCAAAGATTGCATCTTTGCTCCTTATTTCCCTTCCGACGACCCTCAAAAGTTCGCCATCGTTCACAAGGTCTTCGGAGCTAGCAACGTCGGCAAAATGTTGCAGGAGCTTCCAGTTCATCAGAGATCAGACGCAGTGAGCAGTTTAGTGTATGAAGCGAATGCCAGGGTACGAGACCCAGTGTACGGGTGTGTAGGGGCCATATCGTTTCTGCAGAATCAAGTTTCAGAGCTTCAAATGCAGCTCGCTGTGGCTCAGGCTGAGATCCTCTGCATCCAGGTGCAGCATGAGCCTTCTGAGCCTGTAGCTGTGATTCAAAGCCCAGAACTTGGTAATCCCAATCACCATCATCATCAGAGACAACAACCTTATTATCTCCAAAACGAGCAGTACCTTAACTTTGCGTCTTCCAGCAATGTAATCCAGGACTCTCTTCAGAGAGAGAGCTTCTTTGGCCACGACATGGTTTCTTAA 525 0.4952 MGGTSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVGKMLQELPVHQRSDAVSSLVYEANARVRDPVYGCVGAISFLQNQVSELQMQLAVAQAEILCIQVQHEPSEPVAVIQSPELGNPNHHHHQRQQPYYLQNEQYLNFASSSNVIQDSLQRESFFGHDMVS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1617 174 Coils Coil 85 105 - -
Acco05g1617 174 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Acco05g1617 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 139 - -
Acco05g1617 174 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1617 Acco-ChrAcco05 32573676 32574312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1617 3 116 AS2 family AT2G30130 89.474 1.45e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco05g1617 LOB 2.7e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1617 05 32573676 32574312 Acco05g1617 05 32573676 32574312 ECH