Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1607 ATGAGCAGCATTCTCAAGATCCTCAGACATTTTTTTGCATTGGGAATGAGAAGCAGCATGAAGGGGTACGAGCCGCGTTCCAGTTCATCCTGCGCCGCCTGCAAGCTCCTCAAGCGCCGGTGCGCCCCCACCTGCATCTTCGCCCCCTACTTCCGCTCCGACGAGTGCAAGAAATTCGCCAAAGTCCACAAGGTCTTTGGCGCCAGCAATGTCAGCAAGATCCTCTTTGAGGTCCCCGAGGAGCAGCGAGAGGACACCGTCAACTCCCTCGCCTACGAGGCCGACGCCCGCCTCAAAGACCCCGTTTACGGTTGCATTGGCGCCATCGCTCTGTTGCAGACCAAGATGGTTGAGCTCCAGCAAGACCTCGCCATCGCCCGCGCACGTCTCGCCCGCTACTCTTCCGCCTCCGCCGCCGCAGCCGTTGATGACTCCTTCCTTCCCTTCCCTTCTTCTTCCATTGACAATAGCTTTCTCCCTGCTCACGTGGGTCTGCCTCCTTTCCCTGACTCTTCCTCCTCTTGCTGCGATGTCGACGATGGTTTCTCCTCGTCTCAGGTTCAGTTATCGAGCCGACATGATATGGTGGATGATTTTTTCCAAACCCCATATATATTCTGA 621 0.5652 MSSILKILRHFFALGMRSSMKGYEPRSSSSCAACKLLKRRCAPTCIFAPYFRSDECKKFAKVHKVFGASNVSKILFEVPEEQREDTVNSLAYEADARLKDPVYGCIGAIALLQTKMVELQQDLAIARARLARYSSASAAAAVDDSFLPFPSSSIDNSFLPAHVGLPPFPDSSSSCCDVDDGFSSSQVQLSSRHDMVDDFFQTPYIF 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1607 206 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
Acco05g1607 206 Coils Coil 109 136 - -
Acco05g1607 206 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 28 156 - -
Acco05g1607 206 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1607 Acco-ChrAcco05 32490020 32491227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1607 20 145 AS2 family AT3G11090 75.000 2.72e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco05g1607 LOB 3.7e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1607 05 32490020 32491227 Acco05g1607 05 32490020 32491227 ECH