Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1604 ATGGGCGACCCTTCATCCCCTCCGTCTCTATCCCCTGAAGCCGCCGCCGCCACGCCCACTCACCACCCTTCTTCCCGCAAAACCAAAGGCAAAGGTGGTCCCGACAACAACAAGTTTAGGTTTCGCGGAGTCAGGCAGAGAAGCTGGGGCAAATGGGTCGCCGAGATCCGTGAGCCCCGCAAGCGTACCCGCAAGTGGCTCGGCACCTTCTCCACCGCCGAAGACGCCGCCCGTGCCTACGACCGTGCCGCCCTCTTCCTCTACGGCTCCAGAGCCCAGCTCAACCTCCAGCCTTCTCTCTCCTCCTCCTCCTCCTCCCGCCCCTCCAATAATACTTCCTCTACCCAAACCCTACGCCCCTTACTCCCCCGTCCACCCGCCGCCGCCTTGCCCTACGGCCTTTATAATACCCAGTTTCTCTGCCCAGTCAACAACGCACTACAAGTACTGCATCAACATCATCCACACAAAGTGGTGCAATTTTATGGGTCCCCGCAATCCGACTGTGGAAATAATACTAATCTGGATGACTCCGCTACAGCAGCAACCTCGTACCAGAACCTTAGCCCCGATCTGATGATGCATGCGTCGTCAAACAATAATCAGGAGCAGCATAGTCATAGTCATAGTCATAGTCATGGACAGAGTGATTGCATGTACGATGATATTAGCTCCTTGGTAGGATCAGGCTTGAGTAATTCTTCTTACCAGACTACCATTGTAACGCCGCAGCGGGCCGCGGCCACTATGGATCTGCCGGTGGCGGCAGTGGGAGCAGGTAGCGTGGGATCGCCGTCTATGTGGCCGACGATGACAAATGAAGAAGAGTACTACCCTTCTTGTCTTTGGGACTATAATGATCCTTTCTTGTTTGATTTTGAGGTGGAATCAATTAATGGACAATAG 906 0.5453 MGDPSSPPSLSPEAAAATPTHHPSSRKTKGKGGPDNNKFRFRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDRAALFLYGSRAQLNLQPSLSSSSSSRPSNNTSSTQTLRPLLPRPPAAALPYGLYNTQFLCPVNNALQVLHQHHPHKVVQFYGSPQSDCGNNTNLDDSATAATSYQNLSPDLMMHASSNNNQEQHSHSHSHSHGQSDCMYDDISSLVGSGLSNSSYQTTIVTPQRAAATMDLPVAAVGAGSVGSPSMWPTMTNEEEYYPSCLWDYNDPFLFDFEVESINGQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1604 301 MobiDBLite consensus disorder prediction 97 123 - -
Acco05g1604 301 SUPERFAMILY DNA-binding domain 41 98 IPR016177 GO:0003677
Acco05g1604 301 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Acco05g1604 301 MobiDBLite consensus disorder prediction 97 120 - -
Acco05g1604 301 MobiDBLite consensus disorder prediction 1 41 - -
Acco05g1604 301 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 218 - -
Acco05g1604 301 CDD AP2 40 93 IPR001471 GO:0003700|GO:0006355
Acco05g1604 301 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Acco05g1604 301 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Acco05g1604 301 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Acco05g1604 301 MobiDBLite consensus disorder prediction 192 214 - -
Acco05g1604 301 FunFam Ethylene-responsive transcription factor 2 40 98 - -
Acco05g1604 301 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Acco05g1604 301 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1604 Acco-ChrAcco05 32457394 32458299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1604 24 293 AP2-EREBP Transcription Factor Family AT2G40220 44.625 4.22e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco05g1604 AP2 2.7e-13 CL0081