Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1603 ATGACTAGCCAGCAAGATGCTCAGGTGTTCAATTGGCACTATACAGAGCTGGATAACCATAACCTCGAACTCCGAAGCAGAAAAGTGTTGTTTATCATCTTTCTTCTCTGTTTGATCCTTCTAATTATTCTTCTCTTCATCTGCGCTCGATGGATCTGCCGTTACCGTGACCACCTTCCGACCACCTTCCACTCTAGCCAGGTGCGTCACGCGGCGTCTCCACCGTCGCAGGGTCTCGACCTTGATTCTATCAAGAAATTGCCGATAATCTTGCACCAGGCGCCGTCGGACTCTGATTGCGCATTGGAGGAAACAGAGTGCTGTATTTGCCTCAGCGTGTTCGAAGATGGCGAGAAATTGAAGTTCCTTCCCGGATGCAAACATTGTTTCCACTGTCAGTGTGTGGATAACTGGCTTATTAATCACTCCAGTTGCCCACTCTGCAGAGCTTCTATCAAAGTTGATGTTGATTCTTCTTCGTTTCCAGAGATTTTGATTCAAGAGCCACCGATTAGAATCGACCTTCAATTATAG 534 0.4682 MTSQQDAQVFNWHYTELDNHNLELRSRKVLFIIFLLCLILLIILLFICARWICRYRDHLPTTFHSSQVRHAASPPSQGLDLDSIKKLPIILHQAPSDSDCALEETECCICLSVFEDGEKLKFLPGCKHCFHCQCVDNWLINHSSCPLCRASIKVDVDSSSFPEILIQEPPIRIDLQL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1603 177 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Acco05g1603 177 Pfam Ring finger domain 106 149 IPR001841 -
Acco05g1603 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 155 IPR013083 -
Acco05g1603 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 156 - -
Acco05g1603 177 SMART ring_2 107 148 IPR001841 -
Acco05g1603 177 SUPERFAMILY RING/U-box 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1603 Acco-ChrAcco05 32433683 32434216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1603 3 158 C3H Transcription Factor Family AT3G11110 37.821 2.06e-30 107
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1603 05 32433683 32434216 Acco05g1603 05 32433683 32434216 CCT