Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1602 ATGGGTCTCACCTCAAACAACAGCGTCGCTTCCAATAATCGAGTGAAAGGCTCTTGGAGCCCCCAAGAGGACGCCACGCTCATCAAGCTCGTCCACCAGCACGGCCCTCGCAATTGGTCTCTCATCAGTATCGGCATACCAGGTCGCTCCGGCAAGTCTTGCAGGCTCCGATGGTGCAATCAGCTTAGCCCCGGCGTACAACACCGCCCTTTCACTCCCGACGAAGATGCCGTCATCATCCAGGCTCACGCCATCCACGGAAATAAGTGGGCCACCATTTCTCGTCTCTTGCCCGGCCGAACGGACAACTCCATCAAGAACCACTGGAACTCCACCCTGCGCCGCCGCCGAACCGCGGAAATGTCGTCTGCGTCCGGATCGTCGGAGTCAGAATCTATTATGGTAATGAAGAAGCGGCCTAATCATTGTGATGCCCCGCATTCATCGGAAATGAGGGAGTCGGAGCAGCGATTGAAGAGGCAGTGCCTCGGGAGGATTTCACTGGAAAACAATAGTTACAAAGATCCAATGGTGGTCTCTGTGAAGACGTCGTTGAGTTTGTTACCTCCAGGAGACAGAATAGACAACAATGTGAAAGAAGAGAACGAGGAACACGAAGCTGAAGGGAGTGAGAACGGGAAGCGAAACGTAGAGGAAGAACCGTACCTGATGAGGATGATGAAGCGCGTGATAGCAGAGGAGGTTAGGAATTACATTGATAGTTTGCGGGCCGATGATAAGATCGTTCTCAGAACTGGGCTGGGCCTTCACATGGGCCCATCTTCTTTACCTAAGTAA 798 0.5301 MGLTSNNSVASNNRVKGSWSPQEDATLIKLVHQHGPRNWSLISIGIPGRSGKSCRLRWCNQLSPGVQHRPFTPDEDAVIIQAHAIHGNKWATISRLLPGRTDNSIKNHWNSTLRRRRTAEMSSASGSSESESIMVMKKRPNHCDAPHSSEMRESEQRLKRQCLGRISLENNSYKDPMVVSVKTSLSLLPPGDRIDNNVKEENEEHEAEGSENGKRNVEEEPYLMRMMKRVIAEEVRNYIDSLRADDKIVLRTGLGLHMGPSSLPK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1602 265 MobiDBLite consensus disorder prediction 1 20 - -
Acco05g1602 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Acco05g1602 265 Gene3D - 70 116 - -
Acco05g1602 265 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
Acco05g1602 265 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Acco05g1602 265 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Acco05g1602 265 MobiDBLite consensus disorder prediction 116 134 - -
Acco05g1602 265 MobiDBLite consensus disorder prediction 190 219 - -
Acco05g1602 265 CDD SANT 18 60 IPR001005 -
Acco05g1602 265 FunFam MYB transcription factor 16 67 - -
Acco05g1602 265 Gene3D - 15 67 - -
Acco05g1602 265 MobiDBLite consensus disorder prediction 194 219 - -
Acco05g1602 265 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Acco05g1602 265 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Acco05g1602 265 Coils Coil 200 220 - -
Acco05g1602 265 MobiDBLite consensus disorder prediction 114 156 - -
Acco05g1602 265 FunFam Transcription factor MYB44 70 116 - -
Acco05g1602 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Acco05g1602 265 SMART sant 67 115 IPR001005 -
Acco05g1602 265 SMART sant 15 64 IPR001005 -
Acco05g1602 265 CDD SANT 70 113 IPR001005 -
Acco05g1602 265 MobiDBLite consensus disorder prediction 135 156 - -
Acco05g1602 265 PANTHER MYB PROTEIN-RELATED 16 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1602 Acco-ChrAcco05 32420730 32421527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1602 5 124 MYB Transcription Factor Family AT4G37260 67.500 1.37e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g1602 Myb_DNA-binding 2.6e-16 CL0123