Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1589 ATGCACAGAGAGGACTTTGATATGTGTGGTGGCTCGAAAACTAAACTTTCTCCCTCTAACAACGACATGGATAGCGAACTTCTGAAGCAGAATCGTGATGTTCTCTGTAACATCTCAAGTCTGCTCGAGCTGTCTGCGACTGATGATCTTGAAACGTTCAGGAGGGAAGTAGAAGAGAAGGGTTCTGATGCGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATTGGAACAAGGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTGTTTGGAAGCACTGAGGTACTGAAGTATATTATTGAAACAGGCAGAGTTGATGTGAACAGGGCCTGTGGTTCTGATAAGGCCACAGCTCTCCACTGCGCTGTTGCTGGTGGCTCTGAATCCTCACTTCAGATTGTTAAGCTCTTGCTTGAAGCGAAGGCTGATCGTGATTGCCTTGATGCTAGCGGAAACAAGCCTGTTAATTTGATTGCTCCTGCTTTTAGTTCTTCATCCAGCTTGCGAAGGAAGGCGATGGAGTCGTTGCTGAGAGGTGATGAATTAAGTGATCAAATTATTGAGCAGGAGGCGGAGCAACAGAAAATTACAGCGCCAGCAGAGAAGAAAGAATATCCTGTCGATATATCTTTGCCTGACATAAACAATGGTATATATGGAACAGATGAGTTCAGGATGTACAGCTTCAAGGTGAAGCCGTGTTCAAGGGCATACTCTCATGACTGGACTGAGTGTCCATTCGTTCATCCCGGGGAGAATGCAAGGAGGAGGGATCCACGGAAGTATCCTTACAGCTGCGTTCCCTGCCCGGAATTTCGCAAGGGAAGCTGCCTGAAAGGGGATGCCTGTGAGTACGCTCATGGTGTTTTTGAGTCATGGCTTCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGATGAGATTGGTTGCTCACGAAAAGTTTGCTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACCGGTTCAGCAATGCCTTCACCAAAATCCTTTTCAGCTAGTGGGCTTGACACTACAGTTATGAGTCCTTTAGCTCTTAGCTCCTCATCTTTGCCAATTTCAACGGTTTCAACACCGCCCTTGTCTCCTTTGGCTGCTTCATCTCCCAAGAGTGGAAGCCTGTGGCAGAACAAAATAAACCTCACTCCACCGGCCCTGCAGCTCCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTTGGGCTAGAAAGTCCAGCTAACCAGCAGCAGCAGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCTTTCCGAAACAAAGAGTATGGTAGGCTAGGTGATTTGAAGCCAACGAACCTCCATGACCTTTTGGGATCTGTTGATCCTTCTGTTCTTTCTCAGCTTCACGGACTTTCACCACAAGCTTCAATGCCTACCCAGCTGCAATCTCCCAATGGGCTTCAAATGCACCAAAACATGAACCACCTTCGCGCAAGCTATCCAACCAATCTTCCTTCCTCACCGGCAAGAAGTTCCTTGGGTTTAGGGTTTGACTCATCCTCTGCTGTGGCAGCAGCTGTGATGAACTCAAGATCTGCAGCATTCGCAAAGCGAAGTCAAAGTTTTATTGATCGTGGGGCAATATCACCCCACCATTTCAGCCACCCCCCAGCCTCCAACTCCGCACTTTCTGATTGGAGATCACCTGATGGGAAACTGGATTGGGGCATGAATGGAGATGAGCTGAACAAACTGAAGAAATCTGCTTCTTTTGGGTTTAGAAACAATGGAAATAATAACACCACCGGGGCACGGTCTGAAAATTTTGACCCAGACGTGTCGTGGGTTAATTCGTTGGTTAAAGATGTTCCCTCTGAGAAGCAGCAGCAACTTGATCCCAATAGAGAGATGCTTTCACCATGGATGGAGCAACTGTATAGAGAACACGAGCAGATAGTGGCATAA 1995 0.4747 MHREDFDMCGGSKTKLSPSNNDMDSELLKQNRDVLCNISSLLELSATDDLETFRREVEEKGSDANEESFWYGRRIGTRKMGLEKRTPLMVASLFGSTEVLKYIIETGRVDVNRACGSDKATALHCAVAGGSESSLQIVKLLLEAKADRDCLDASGNKPVNLIAPAFSSSSSLRRKAMESLLRGDELSDQIIEQEAEQQKITAPAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCLKGDACEYAHGVFESWLHPAQYRTRLCKDEIGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASGLDTTVMSPLALSSSSLPISTVSTPPLSPLAASSPKSGSLWQNKINLTPPALQLPGSRLKAALSARDLDLEMELLGLESPANQQQQLIEEIARISSPSFRNKEYGRLGDLKPTNLHDLLGSVDPSVLSQLHGLSPQASMPTQLQSPNGLQMHQNMNHLRASYPTNLPSSPARSSLGLGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRGAISPHHFSHPPASNSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNNNTTGARSENFDPDVSWVNSLVKDVPSEKQQQLDPNREMLSPWMEQLYREHEQIVA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1589 664 ProSiteProfiles Ankyrin repeat profile. 118 153 IPR002110 GO:0005515
Acco05g1589 664 SMART ANK_2a 118 150 IPR002110 GO:0005515
Acco05g1589 664 SMART ANK_2a 83 113 IPR002110 GO:0005515
Acco05g1589 664 Gene3D - 269 330 - -
Acco05g1589 664 SMART c3hfinal6 302 325 IPR000571 GO:0046872
Acco05g1589 664 SMART c3hfinal6 267 293 IPR000571 GO:0046872
Acco05g1589 664 Gene3D - 37 184 IPR036770 -
Acco05g1589 664 MobiDBLite consensus disorder prediction 1 22 - -
Acco05g1589 664 FunFam Zinc finger CCCH domain-containing protein 66 225 293 - -
Acco05g1589 664 SUPERFAMILY Ankyrin repeat 42 160 IPR036770 -
Acco05g1589 664 PANTHER UNKEMPT FAMILY MEMBER 43 633 IPR045234 -
Acco05g1589 664 ProSiteProfiles Zinc finger C3H1-type profile. 267 294 IPR000571 GO:0046872
Acco05g1589 664 Pfam Ankyrin repeats (many copies) 85 142 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1589 Acco-ChrAcco05 32314481 32317741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1589 8 632 C2H2 Transcription Factor Family AT5G12850 41.159 4.55e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco05g1589 Ank_4 5.9e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1589 05 32314481 32317741 Acco05g1589 05 32314481 32317741 ECH