Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1561 ATGGAAAGAGTGCATGGTGAGATCCCCAAAGAAATTGGCCGTCTCAAACGGTTGCAAACTCTCTTATTGGGACAAAATAACTTCCAGGGAGAGATTCCCGTACAGCTTGCTAACTGTTCAAATCTGCAAGATATATTCCTCTACCACAATAACTTGACTGGCAAAGTTCCTTCCTGGTTAGGATCTTTGCGATCACTTCAGTTATTGAGCCTTAGTACCAATAAGTTCTTTGGTACTATTCCTCAGTCCTTGGGAAATCTTTCATCATTAGGGTTCTTGTATCTCCCTTACAATAACCTGCAAGGAAGTATACCCCAAGCTCTAGGCCAGCTAACAAGTTTGATCGAGATAGGTCTAGCTCTTAATAATTTGTCTGGAATAATTCCTTCATCACTCTATAACCTTTCCAATGTTGAGGTATTTGATTTGGGAAGTAACCAATTGTCCGGAACTATTCCTTCAAATATAGACCTTTCTTTCCCCAAAGTTCAAGTTTTTATTGTTGGAAACAACTCTTTAACTGGAACTATTCCTCCCACATTTTCCAACCTCTCTCAATTGGAAAGATTCTATCTAATTGCAAATAATTTAAGGGGGCCATTTCCCACCACTTTGGGAAGACTGCAAAATCTTGTTGAATTGAACGTCGACTTCAATGTTTTGGGGAGTGGACGCAATGGTGATTTGGATTTCCTTCCATCATTAACCAACTGCAGCCAATTGCTTAAATTGGAGCTACAAGGAAATGGATTTGGTGGTATATTGCCAAAGTCAATTGGAAACTTCACTTCATCATTGGATACACTTCTAATAGGGCACAATCAGATCTCTGGAAGCATACCTGAAGAGCTTGGAAACCTAGTTGGCTTAACAATTCTCGGTATGGGAGAGAATTTTCTCCAAGGCGAAATTCCAGTTTCAATTGGAAAATTGAAAAATCTTGGAAGAATGTTTTTGGAAGTAAACCAATTATCCGGAAATATTCCTACCGTCCTTGGCAATCTTACCAAGTTGTTCGATCTGCATTTACACACAAACAATTTTGAGGGAATTATTCCAGATGCCCTCAAACATTGCAAAAATATGCAGAAATTGTATCTTTCCGCAAACAACCTAAGCGGTAATATACCCAATGACACATTTGGTCAGCTAGAAGAATTAATAGTTCTTGACATGTCTAACAATTCCTTGATTGGTCCCCTTCCATCAGAGTTTGGTAACTTGATGCATTTAGTGGAATTATTTGTTTATGAAAACAAATTTTCTGGTGATATTCCTGCTGCACTAGGCTCTTTTAATAAAGACCAAACTCCTTCTTTAGCAATTAAAGGAACCATTGGTTATATTCCTCCAGAATATGGAGAAGGTGGACCGATGACAGTAAAAGGGGATATCTATAGCTATGGAGTTCTATTGTTAGAGTTGCTCACCGGAAAAAAGCCTACAGATAGAATGTTTGGAGAACATTTGAGTCTGCACAAGTTTTGTAAGATGGCATTGTCAGAAAGATCGGTCATTGAGATAGTCGACTCAAGTTTGCTCTTACAATCCGAAAGAGACCACATCAAAATTCTAGAGTTTTTTATCAGCTTTGCTAAGATTGGAGTGGCATGTTCAATAGATTTTCCCAGCGAACGGATGAGCATAAAAGATGTTCTGGTGGAGTTGCTTGCCATTAAAAAGACATTGTCCTCAGTTGATATTCAACATTTTTATGCATAA 1722 0.3839 MERVHGEIPKEIGRLKRLQTLLLGQNNFQGEIPVQLANCSNLQDIFLYHNNLTGKVPSWLGSLRSLQLLSLSTNKFFGTIPQSLGNLSSLGFLYLPYNNLQGSIPQALGQLTSLIEIGLALNNLSGIIPSSLYNLSNVEVFDLGSNQLSGTIPSNIDLSFPKVQVFIVGNNSLTGTIPPTFSNLSQLERFYLIANNLRGPFPTTLGRLQNLVELNVDFNVLGSGRNGDLDFLPSLTNCSQLLKLELQGNGFGGILPKSIGNFTSSLDTLLIGHNQISGSIPEELGNLVGLTILGMGENFLQGEIPVSIGKLKNLGRMFLEVNQLSGNIPTVLGNLTKLFDLHLHTNNFEGIIPDALKHCKNMQKLYLSANNLSGNIPNDTFGQLEELIVLDMSNNSLIGPLPSEFGNLMHLVELFVYENKFSGDIPAALGSFNKDQTPSLAIKGTIGYIPPEYGEGGPMTVKGDIYSYGVLLLELLTGKKPTDRMFGEHLSLHKFCKMALSERSVIEIVDSSLLLQSERDHIKILEFFISFAKIGVACSIDFPSERMSIKDVLVELLAIKKTLSSVDIQHFYA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1561 573 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Acco05g1561 573 Pfam Leucine rich repeat 17 76 IPR001611 GO:0005515
Acco05g1561 573 Gene3D Ribonuclease Inhibitor 2 96 IPR032675 -
Acco05g1561 573 SMART LRR_typ_2 15 39 IPR003591 -
Acco05g1561 573 SMART LRR_typ_2 359 383 IPR003591 -
Acco05g1561 573 SMART LRR_typ_2 384 407 IPR003591 -
Acco05g1561 573 SMART LRR_typ_2 135 159 IPR003591 -
Acco05g1561 573 SMART LRR_typ_2 335 358 IPR003591 -
Acco05g1561 573 SMART LRR_typ_2 111 134 IPR003591 -
Acco05g1561 573 SMART LRR_typ_2 63 87 IPR003591 -
Acco05g1561 573 Gene3D Ribonuclease Inhibitor 225 326 IPR032675 -
Acco05g1561 573 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 233 454 - -
Acco05g1561 573 SUPERFAMILY L domain-like 5 235 - -
Acco05g1561 573 Gene3D Transferase(Phosphotransferase) domain 1 429 570 - -
Acco05g1561 573 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 234 456 - -
Acco05g1561 573 SUPERFAMILY L domain-like 230 434 - -
Acco05g1561 573 Gene3D Ribonuclease Inhibitor 97 159 IPR032675 -
Acco05g1561 573 Gene3D Ribonuclease Inhibitor 327 428 IPR032675 -
Acco05g1561 573 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 228 - -
Acco05g1561 573 Gene3D Ribonuclease Inhibitor 160 224 IPR032675 -
Acco05g1561 573 SUPERFAMILY Protein kinase-like (PK-like) 438 556 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1561 Acco-ChrAcco05 31933262 31936301 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1561 435 561 Receptor kinase-like Gene Family AT3G47570 39.370 1.68e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Acco05g1561 LRR_8 1.3e-06 CL0022