Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1533 ATGGAAACTCTGTACCCATCTTCTTTTGTGCCTAACTCAGACTGGTACGTTCAAGATACCTTCAGCAACACAGAATGGACGAGAGAGGAGAACAAGAGGTTCGAGAGTGCCCTTGCCATATACGATAAGGACACACCAGATAGGTGGCTGAAGGTGGCAGCCATGATCCCAGGTAAAACCGTGTACGATGTGATCAAGCAGTACAGAGAACTAGAAGAAGACATCGGCGAAATCGAAGCGGGTCGGGTCCCAATACCCGGGTACCTAGCTTCATCTTTCACCTTTGAGTTGGTTGATCACCAGACTTATGATGCATACAGAAAGAGGCCTGTGACTTTCAAGGGTGGTTCTTCTTCAGATCATGAGAGAAAAAAAGGCGTGCCTTGGACTGAAGAAGAACACAGGCGTTTCCTGATGGGGCTTTTGAAGTATGGTAAAGGAGATTGGAGGAACATCTCAAGGAACTTTGTTGTGACAAAGACACCAACTCAAGTGGCAAGTCATGCTCAGAAGTACTACATAAGACAGAAGCTTTCTTCTGGATCAGGCAACAACAAAAGGAGACCTAGTATACACGACATAACCGTTCTTAATCTCACAGAATCTTCCACCACCACCCCACAAGACAACAACAACAACAAGCCCCCTCAATTCAATGATCAGTCTCCTATGTTCTCGCATCAGAAGCCAAATGATGGGGGTTTTTTCAACCCTAGTTGTGACAGTTTCTTGCATACATCATCTTCTTCTGATGATATTGACCGTGTCCTTCATGAGGCTTATGGTTACACCAACCTTAAAATCCAGGGTTTTAGGGAAAATCCTGGGGACTTTAGTAACCCAGCAGCTGTCTTAGGTATTCATGCATTGTAA 873 0.4502 METLYPSSFVPNSDWYVQDTFSNTEWTREENKRFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYRELEEDIGEIEAGRVPIPGYLASSFTFELVDHQTYDAYRKRPVTFKGGSSSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSSGSGNNKRRPSIHDITVLNLTESSTTTPQDNNNNKPPQFNDQSPMFSHQKPNDGGFFNPSCDSFLHTSSSSDDIDRVLHEAYGYTNLKIQGFRENPGDFSNPAAVLGIHAL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1533 290 ProSiteProfiles Myb-like domain profile. 121 173 IPR001005 -
Acco05g1533 290 SMART sant 125 175 IPR001005 -
Acco05g1533 290 SMART sant 22 74 IPR001005 -
Acco05g1533 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 177 IPR017930 -
Acco05g1533 290 ProSiteProfiles SANT domain profile. 129 177 IPR017884 -
Acco05g1533 290 FunFam transcription factor MYB1R1 127 178 - -
Acco05g1533 290 CDD SANT 128 172 IPR001005 -
Acco05g1533 290 CDD SANT 25 71 IPR001005 -
Acco05g1533 290 Gene3D - 20 85 - -
Acco05g1533 290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 239 IPR043363 -
Acco05g1533 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 176 IPR006447 GO:0003677
Acco05g1533 290 SUPERFAMILY Homeodomain-like 123 177 IPR009057 -
Acco05g1533 290 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Acco05g1533 290 SUPERFAMILY Homeodomain-like 24 75 IPR009057 -
Acco05g1533 290 Gene3D - 127 178 - -
Acco05g1533 290 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
Acco05g1533 290 MobiDBLite consensus disorder prediction 201 231 - -
Acco05g1533 290 Pfam Myb-like DNA-binding domain 25 70 IPR001005 -
Acco05g1533 290 Pfam Myb-like DNA-binding domain 128 172 IPR001005 -
Acco05g1533 290 FunFam Transcription factor SRM1 18 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1533 Acco-ChrAcco05 31509770 31510856 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco05g1533 Myb_DNA-binding 1.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1533 05 31509770 31510856 Acco05g1533 05 31509770 31510856 CCT
Acco05g1533 05 31509770 31510856 Acco05g1533 05 31509770 31510856 ECH
Acco09g0181 09 2001127 2002527 Acco05g1533 05 31509770 31510856 ECH
Acco05g1533 05 31509770 31510856 Acco09g0181 09 2001127 2002527 ECH