Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1516 ATGAGCTTCGCCACGCTTGTTTGGATTGGTGTTTTGAGGAACCGTGCGGCTGAGGAGGTTGAGATGGGTAGAGTGATCCGCGCTCAGCGTAAGGGTGCTGGTTCCGTCTTCAAGTCCCACACCCACCACCGGAAGGGCCCTGCTAGGTTCCGGAGCCTCGACTTCGGTGAGCGAAATGGCTATCTGAAAGGAGTAGTCACCGATATCATCCACGATCCTGGCCGTGGCGCTCCTCTCGCCAAGGTTGCTTTTAGACATCCGTTTCGCTACAAAAAGCAGCAAGAGCTTTTCGTAGCGGCCGAAGGTCTGTACACTGGCCAGTTCATTTACTGCGGCAAGAAAGCCACCCTTGTCGTCGGTAACGTCTTGCCCATCAGATCCATTCCTGAAGGAGCTGTTATATGTAACGTGGAGCATCATGTTGGTGACCGCGGCGTCTTCGCTAGGTGTTCGGGTGATTATGCTATTGTTGTTAGCCATAACCCTGATAACGATACATCTAGGATCAAGCTTCCTTCTGGAGCAAAAAAGATTGTTCCAAGTGGTTGTCGTGCCATGATTGGGCAGGTTGCAGGTGGAGGTAGAACTGAGAAGCCCCTTCTGAAAGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAACCCGGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGACATGCTAGTACCGTCAGGCGTGATGCACCTCCTGGGCAAAAGGTCGGTCTTATTGCCGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCTGCCACTGCTGCTAAAGCTGACAAGACTACCTAG 849 0.5253 MSFATLVWIGVLRNRAAEEVEMGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVAFRHPFRYKKQQELFVAAEGLYTGQFIYCGKKATLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVVSHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKTT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1516 282 Gene3D - 111 190 IPR014722 -
Acco05g1516 282 Gene3D - 22 107 IPR012340 -
Acco05g1516 282 ProSitePatterns Ribosomal protein L2 signature. 218 229 IPR022671 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 Pfam Ribosomal Proteins L2, C-terminal domain 119 246 IPR022669 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 FunFam 60S ribosomal protein L2 22 107 - -
Acco05g1516 282 FunFam 60S ribosomal protein L8 111 190 - -
Acco05g1516 282 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 6 276 IPR002171 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 FunFam 60S ribosomal protein L2 191 268 - -
Acco05g1516 282 SUPERFAMILY Translation proteins SH3-like domain 120 267 IPR008991 -
Acco05g1516 282 SMART Ribosomal_L2_C_2 117 252 IPR022669 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 MobiDBLite consensus disorder prediction 231 251 - -
Acco05g1516 282 SMART Ribosomal_L2_2 32 111 IPR002171 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 Gene3D Ribosomal protein L2, domain 3 191 268 IPR014726 -
Acco05g1516 282 PANTHER RIBOSOMAL PROTEIN L2 21 276 IPR002171 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 Pfam Ribosomal Proteins L2, RNA binding domain 34 111 IPR022666 GO:0003735|GO:0005840|GO:0006412
Acco05g1516 282 SUPERFAMILY Nucleic acid-binding proteins 21 118 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1516 Acco-ChrAcco05 31298027 31300926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1516 22 279 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.023 0.0 503