Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1496 ATGGCTCCTTATGAAGTCAATCATCTCTCTCACCCTTGTATATACGGGGATTTTGCTTCCTCATACTCGGAGAGGAAGTCTGGATTTATGAAATGGATTAGTAAGCTTTTCAAAGGTGGGTCCAGCCGAGGAAGGGGAGGTCGTCATCTTCAGCAGCCTACAGAGGAAAATTTGGTTTGGCGTAATCCATCTAGATCATTGGATGACCGTTCTAGGGGGGCTCAGAAGGAGAAAGAGGATCTGGACCACGCAATTGCTCTTTCTTTAGCTGAAGATTTGAAGAAACCAAATGGATATAGATGGCGTGAAGAAATTGATGAAGATTATGGGAGTGAATTTCAGGACAACCATAACTCATCTGCACATCCTCCATATGCCCGGTCAACATATGGGGAAAATAGGGTATGTGATGCGTGCAAGCGGGAGATAGTCTATGGGAGTTGTTTAAGATGCAATAATAGTTATTTTCATCCAGGGTGCTTTCGCTGTCACTCTTGTCGCTACCCCATTACTGAGCAGGAGTTTTCTTTATCAGGGAAGCATCCGTATCACAAGTCCTGTTTCAAAGAGTTGACTCATCCAAAATGTGAAGTTTGCTTCCAATATATTCCTATAAATGCTGCCGGTTTGATTGAGTATAGGTGTCACCCATTTTGGTCCCAAAAATATTGTCCAGCTCATGAATATGATGATACAGCTCGCTGCTGCAGTTGTGAAAGATTGGAGCCTTCAAATGTAAAATACTATAGTTTGGAAGATGGGCGGAGTTTATGTTTAGAGTGCATGGAGTCAGCTATTATGGACACTGGAGATTGTCAACCTCTTTACCATGCTATTAGAGATTATTATGAAGGAATGAATATGAAAATAGACCAACAAATTCCTATGCTTCTGGTTGAGAGGCAAGCACTCAATGAAGCTATAGTTGGGGATAAAAATGGTTACCATCACATGCCGGAGACAAGAGGCTTGTGCCTTTCTGAAGAGCTGACTGTCACCAGTATTCATAGAAGACCAAGAATTGGAGGCCACCGGCTTATCGGAATGCGAACCCATCCTCAAAAGCTAACTAGAAAATGTGAAGTTACAGCCATTCTTGTTCTCTACGGTCTTCCAAGGTTGCTCACAGGCGCTATCCTTGCCCATGAGTTGATGCACGGCTGGTTACGTCTTAAAGGTTACCGTAATCTTAATCCTGAAGTAGAGGAAGGAATCTGTCAGGTTCTATCTTCTACGTGGCTTGAGTCAGAAGTAATGCCTTGCCTTAAAAGCATGCCTTCAACTTCAGCAGCTTCCTCCTCCTCCTCCTCCTCCTATTACTCACACTACTCATCATCATCTAAGAAAGGAGCCAAATCTGAAGTTGAAAATAAACTGGGTCAGTTTTTCATGAATCAGATAGCCAATGATTCTTCTCCAGCATATGGGGGTGGCTTTAGAGCTGCTAATGAGGCTGTGAACAAATATGGTTTACGCAGAACTCTTGAACATATTCGTTTGACTGGTAGTTTCCCACTGTAA 1521 0.4287 MAPYEVNHLSHPCIYGDFASSYSERKSGFMKWISKLFKGGSSRGRGGRHLQQPTEENLVWRNPSRSLDDRSRGAQKEKEDLDHAIALSLAEDLKKPNGYRWREEIDEDYGSEFQDNHNSSAHPPYARSTYGENRVCDACKREIVYGSCLRCNNSYFHPGCFRCHSCRYPITEQEFSLSGKHPYHKSCFKELTHPKCEVCFQYIPINAAGLIEYRCHPFWSQKYCPAHEYDDTARCCSCERLEPSNVKYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNEAIVGDKNGYHHMPETRGLCLSEELTVTSIHRRPRIGGHRLIGMRTHPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSSTWLESEVMPCLKSMPSTSAASSSSSSSYYSHYSSSSKKGAKSEVENKLGQFFMNQIANDSSPAYGGGFRAANEAVNKYGLRRTLEHIRLTGSFPL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1496 506 CDD LIM_DA1 136 188 - -
Acco05g1496 506 ProSiteProfiles LIM domain profile. 134 194 IPR001781 -
Acco05g1496 506 MobiDBLite consensus disorder prediction 40 78 - -
Acco05g1496 506 PANTHER PROTEIN DA1-RELATED 2 32 505 IPR045218 -
Acco05g1496 506 SMART lim_4 135 187 IPR001781 -
Acco05g1496 506 Pfam Protein DA1 285 501 IPR022087 -
Acco05g1496 506 MobiDBLite consensus disorder prediction 62 78 - -
Acco05g1496 506 ProSitePatterns LIM zinc-binding domain signature. 136 170 IPR001781 -
Acco05g1496 506 Pfam LIM domain 136 189 IPR001781 -
Acco05g1496 506 Gene3D Cysteine Rich Protein 128 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1496 Acco-ChrAcco05 30895068 30899501 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco05g1496 DA1-like 3.4e-99 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1496 05 30895068 30899501 Acco05g1496 05 30895068 30899501 CCT
Acco05g1496 05 30895068 30899501 Acco05g1496 05 30895068 30899501 ECH