Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1451 ATGGCTACGGGGACGACGCCATCTTCTTATTGGTGTTACAGATGCAGTCGGTTTGTGAGGGTCCGGAGGCAGGACACGGTGGTTTGTCCCGATTGCGACGGTGGATTTGTGGAGGAGATTGAGCAAATGCCTCGCCCTGCCTCCATCGTCGATTCGCGCCGGCGGAGGTTTCCGGCGGCTTCGATGTACATGATTGGCGATCACCCCCCCGGTTCTGGACAGCCTCTGCGCCCTGCTTTGAGGAGGGCTCGTCGGAGCGGCGGTGATATTTCTATGGTGAATCCGGTTGTCGTGCTCCGGGGATCGCCTAACCGGGCGGATCATGATTCCGGCGGAGGAGGATATGGGCGCGGGTTTGATCTTTACTACGAAGACGGGTCCGGGTCCGGTCTTCGTCCTCTGCCTCCGAACATGTCAGAGATGCTTCTGGGATCTGGAATCGATAGGCTTCTGGAACAGCTTTCTCAGATTGAAATGAACGGTATTTCGCGATACGAGCCACCTCCGGTTTCCAAAGCCGCCATCGATTCATTGCCGACGATTGAGATTCATGAGAATCATCTCGCGACGGAACCTCACTGCGCCGTTTGTATGGAGCCTTTTGAATTGGGCACCAACGCTCGTGAATTGCCCTGCAAGCACATTTACCATTCAGATTGCATCTTGCCGTGGCTTGCGGTCCGGAATACTTGCCCTGTTTGCCGGCAAGAGCTCCCGGCAGATACGCAGGGCGTTGACGGTCCTGTTTCTGGGCATTCTCTGGCTTGGAACGACGATGACAATGTGGGATTGACTATTTGGAGGCTTCCTGGCGGTGGCTTCGCGGTGGGAAGGTTCACCGGTGGGAGAAGAAGTACTCCTGATCGAGAGCTTCCTGTTGTGTACACAGAAATCGACGGTGGTATTGGAAATGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGACGGAGGGTCGACGAAGAGACAGTGGAGGAGGAGGATTGCGCAAAATGTTTCGTAATATTTTTGGCTGCTTCACTCCTAGACCTCGAGCTCAATTCTCTGCTTCTTCATCATCATCATCATCATCTCCTTCTCCAGAACCTCGACTCTTGAGGAGGAGTACCTCTCGTTCTCGTCCCGTCATGAATACCACGATGCGTTCCCGAAGAACTTGGTCTCTGGACGGCAATGGCGGAACCAGACCTTGGTAA 1197 0.5497 MATGTTPSSYWCYRCSRFVRVRRQDTVVCPDCDGGFVEEIEQMPRPASIVDSRRRRFPAASMYMIGDHPPGSGQPLRPALRRARRSGGDISMVNPVVVLRGSPNRADHDSGGGGYGRGFDLYYEDGSGSGLRPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISRYEPPPVSKAAIDSLPTIEIHENHLATEPHCAVCMEPFELGTNARELPCKHIYHSDCILPWLAVRNTCPVCRQELPADTQGVDGPVSGHSLAWNDDDNVGLTIWRLPGGGFAVGRFTGGRRSTPDRELPVVYTEIDGGIGNGGEPRRVTWSTTTEGRRRDSGGGGLRKMFRNIFGCFTPRPRAQFSASSSSSSSSPSPEPRLLRRSTSRSRPVMNTTMRSRRTWSLDGNGGTRPW 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1451 398 SUPERFAMILY RING/U-box 174 242 - -
Acco05g1451 398 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Acco05g1451 398 MobiDBLite consensus disorder prediction 344 398 - -
Acco05g1451 398 SMART ring_2 194 234 IPR001841 -
Acco05g1451 398 FunFam E3 ubiquitin-protein ligase RING1-like 156 241 - -
Acco05g1451 398 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Acco05g1451 398 MobiDBLite consensus disorder prediction 297 329 - -
Acco05g1451 398 Pfam Protein of unknown function (DUF1117) 262 379 IPR010543 -
Acco05g1451 398 Pfam Ring finger domain 193 235 IPR001841 -
Acco05g1451 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Acco05g1451 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 106 239 - -
Acco05g1451 398 MobiDBLite consensus disorder prediction 345 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1451 Acco-ChrAcco05 30352619 30353815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1451 131 246 C3H Transcription Factor Family AT5G01980 40.517 7.19e-24 101