Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1450 ATGTCTGCTGGAATACGTAATGAAATTTTGCAAGTCTATCTCAGATCATCATTGAAGCTTTCACGAAGCATTGCACCGGTTTCCCTTCGTAATCAAACGCTTGCGTTAACTAGTGGACTCTCAATTCAATTTTCTCAAGCAAATAGAGCCATGAGTTTTGTTTTGAGAGGAACAAGACCAGACATAGAAACCGGATTTCCTGGATTTATTCCTGAGAGGCATGGATTGCGTGTTCATGCAGCACGGCCTACTAATTCCAATTCACTTACTTTTCTTGTCACAGTTCTCCTGTTATTCATGATTCTGAACTCTCACCAGATGTCACCAAATTTTCTGCTTTGGCTCGTGCTAGGAGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATGCAGTAGCAGGCAGTGGTGGCCTTCTTGGGCACACTGAAGTACGTTTGCACATGCCACCATCAATGGCACTTACCACCCGAGGACGTCTACAGGGCCTTAGACTCCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCGCTGGATTCAGATAATGCTCCACCTGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGTCTCCAAAAGAAATCCTCAATGCAACAGACCTCATCTTCAACCTTTGCTGAGAAGAAGCAAGATACATCACATGCAATTGGTAGTACAAAAGGCTCTGATGATGAGCTGACGTGCAGTGTATGTTTGGAGCAAGTTAACGTTGGGGAGCTACTCCGCAGCTTGCCTTGCTTACATCAGTTTCATGCCAATTGCATCGACCCATGGCTGCGGCAACAAGGAACATGTCCTGTATGTAAGTTCAGAGCAGGATCTACTTGGCATGAGGGTGAAGAGAATGAAGTTGATGCTTCAGACATGGTTTGA 978 0.4458 MSAGIRNEILQVYLRSSLKLSRSIAPVSLRNQTLALTSGLSIQFSQANRAMSFVLRGTRPDIETGFPGFIPERHGLRVHAARPTNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAEAHAHAVAGSGGLLGHTEVRLHMPPSMALTTRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQKKSSMQQTSSSTFAEKKQDTSHAIGSTKGSDDELTCSVCLEQVNVGELLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSTWHEGEENEVDASDMV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1450 325 SMART ring_2 263 303 IPR001841 -
Acco05g1450 325 MobiDBLite consensus disorder prediction 226 258 - -
Acco05g1450 325 CDD RING-H2_PA-TM-RING 262 304 - -
Acco05g1450 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 309 IPR013083 -
Acco05g1450 325 ProSiteProfiles Zinc finger RING-type profile. 263 304 IPR001841 -
Acco05g1450 325 MobiDBLite consensus disorder prediction 224 258 - -
Acco05g1450 325 Pfam Ring finger domain 262 304 IPR001841 -
Acco05g1450 325 PANTHER TARGET OF ERK KINASE MPK-1 51 309 - -
Acco05g1450 325 SUPERFAMILY RING/U-box 258 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1450 Acco-ChrAcco05 30341878 30347640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1450 51 325 C3H Transcription Factor Family AT3G55530 73.285 6.15e-136 385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1450 05 30341878 30347640 Acco05g1450 05 30341878 30347640 ECH