LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g1435	ATGGGTTGCTGCTGCAGTGCCAGGATCAAAGCTGAAAGCCCTCCGCGAAAGGATAGGAACTCAAACCATGACAGCAAAGAAGAGGATGGTTTGGTGAGTGGAAGCAGCAAGTTCACCACTTCCTCGGTGCCACCAACTCCGAAACCTCGAACGGAGGGTGAGATCTTGCAGTCTTCCGATTTGAAAAATTTCACATATAATGAGCTAAGAATGGCTACAAGGAACTTTCGTCCGGACAGTATGGTGGGCGAAGGCGGTTTTGGTGGCGTATTTAAGGGTTGGCTTGATGAGCAGACACTTGCACCTGCTAAACCTGGCACTGGGATAGTCATTGCTGTCAAGAAGCTTAACCAAGAAGGCTCCCAGGGACACAACGAGTGGTTGACAGAGATAAATTTTCTGGGGCAGCTGCATCATCCTAACCTTGTAAAATTGATCGGCTACTGCTTAGAGGATGAGCAGCGGCTTTTGGTATATGAGTTTTTGACCAAAGGCAGCTTGGATAATCATTTATTTCGAAGGACGACTCATGTTGAACCGCTTTCTTGGAGCAACCGCATGAAAATTGTCCTTGATGCTGCAAAGGGTCTTGCTTTCCTTCATAGTGATGGAGTAAAAGTAATATTTCGAGACCTAAAAGCTTCTAATATCTTGCTTGATTCGAACTTCAATGCAAAGCTATCTGATTTTGGGTTGGCAAAGGACGGACCATCTGGTGATAGGAGCCATGTCTCTACAAGGGTCATGGGCACTTATGGTTATGCTGCTCCTGAGTATATGGCCACGGGTCACCTGACCAAGAAGAGTGATGTCTACACGTTCGGGGTTGTTCTGCTTGAAATTATGTCAGGCAAACGTGCATTAGACAGAAACAGGCCAGGCAGGGAACAAAATTTAGTGGAATGGGCCAAGCCGTACCTTTCGAGCAAGCGCCGGATTTTCCAAGTTATGGACGCTCGTATTGAAGGCCAGTACCTGGTACGTGAAGCCATGAAAGTAGCTAAAATCGTGATCCAATGCCTGTCTGTAGAACCCCGGTTTAGACCAACCATGGCGGACGTGGTAAGAGCATTGGAACAGCTTCAGAATTCGAGCGATACAGGCAGCACAAGCGATAGCAGTACTGTTCCTAAGCAGCACAAGAGAAGTACGAATGAATCTTTAAATGGGGCTGACACATCTGAGCCCAGATAG	1194	0.4715	MGCCCSARIKAESPPRKDRNSNHDSKEEDGLVSGSSKFTTSSVPPTPKPRTEGEILQSSDLKNFTYNELRMATRNFRPDSMVGEGGFGGVFKGWLDEQTLAPAKPGTGIVIAVKKLNQEGSQGHNEWLTEINFLGQLHHPNLVKLIGYCLEDEQRLLVYEFLTKGSLDNHLFRRTTHVEPLSWSNRMKIVLDAAKGLAFLHSDGVKVIFRDLKASNILLDSNFNAKLSDFGLAKDGPSGDRSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYTFGVVLLEIMSGKRALDRNRPGREQNLVEWAKPYLSSKRRIFQVMDARIEGQYLVREAMKVAKIVIQCLSVEPRFRPTMADVVRALEQLQNSSDTGSTSDSSTVPKQHKRSTNESLNGADTSEPR	397

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g1435	397	Gene3D	Phosphorylase Kinase; domain 1	51	161	-	-
	Acco05g1435	397	PANTHER	OS01G0588500 PROTEIN-RELATED	30	362	-	-
	Acco05g1435	397	MobiDBLite	consensus disorder prediction	361	397	-	-
	Acco05g1435	397	Pfam	Protein tyrosine and serine/threonine kinase	80	358	IPR001245	GO:0004672\|GO:0006468
	Acco05g1435	397	SUPERFAMILY	Protein kinase-like (PK-like)	45	358	IPR011009	-
	Acco05g1435	397	ProSitePatterns	Protein kinases ATP-binding region signature.	82	115	IPR017441	GO:0005524
	Acco05g1435	397	MobiDBLite	consensus disorder prediction	11	31	-	-
	Acco05g1435	397	MobiDBLite	consensus disorder prediction	1	54	-	-
	Acco05g1435	397	SMART	serkin_6	76	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g1435	397	Gene3D	Transferase(Phosphotransferase) domain 1	162	386	-	-
	Acco05g1435	397	FunFam	Serine/threonine-protein kinase BIK1	44	161	-	-
	Acco05g1435	397	ProSiteProfiles	Protein kinase domain profile.	76	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g1435	397	FunFam	Serine/threonine-protein kinase PBS1	162	376	-	-
	Acco05g1435	397	MobiDBLite	consensus disorder prediction	32	54	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g1435	Acco-ChrAcco05	30073292	30076128	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g1435	54	371	Glycoside Hydrolase	AT3G07070	49.530	6.56e-106	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Acco05g1435		PK_Tyr_Ser-Thr	1e-48	CL0016