Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1425 ATGAAGATTGAGTACCACAAGTCTTGTGTGCTTGAGGAAGAAGATGGGTTGAGCAACGATTCTGCCATAACCCACCATTCTCCTTCTGCTCCTATGAGTGTTTATAAGGCCACAAGCAATCATCATCTTGCTGGGGAAACAGCTGCACAATCTCTCATCAACTTCAAAGCCAATAATGGTGGTGAATCTTTGCTTAGCTTTCAGCAGAAAGAGTACTGTTTATGGGAGAATAATGGTTTGCATCAGTGGAATTATCAGATTAGTCCCAGAAGCAATTTAGATCCAACAAGACTGATTCAGAATTTTAATTGCATTCAAACTGCTAGTAGTGGCTATGGATCAGGATCAACAAAAGAGAAGCAGCAAGGAGAGAGTTCATCATCATCATCATATGGGTGGCTATACTCTGAGCCAAATGTTCCTTCTGATACTAATACCCTTCATCATGATTCTTCACCAACAGAAAAAGAAGCTTCCTCCAATAAGCGCCTGTCAATGGGAGAGGGGATGCAAGCCTCAAAGAAGCAATGCACTGCTGCTAGTAAAACACCAAAGCCAACAAAGTCATCAAAACCATCTAACGATCCTCAAAGTATAGCAGCCAAGAATAGAAGAGAGAGGATAAGTGAGAGACTCAAGATACTTCAAGAACTAGTCCCTAATGGCTCCAAGGTTGATTTGGTGAGCATGTTGGAGAAAGCCATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGATACTGGCAACTGATGAATTTTGGCCAGTGCAAGGAGGAAAAGCACCTGATATTTCTCAAGTGAAAGAAGCCGTTGATGCCATTCTTTCATCTCAGAGAGACAGAAACTCCACCTCCAAGCAACAGAAATGA 870 0.4172 MKIEYHKSCVLEEEDGLSNDSAITHHSPSAPMSVYKATSNHHLAGETAAQSLINFKANNGGESLLSFQQKEYCLWENNGLHQWNYQISPRSNLDPTRLIQNFNCIQTASSGYGSGSTKEKQQGESSSSSSYGWLYSEPNVPSDTNTLHHDSSPTEKEASSNKRLSMGEGMQASKKQCTAASKTPKPTKSSKPSNDPQSIAAKNRRERISERLKILQELVPNGSKVDLVSMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAVDAILSSQRDRNSTSKQQK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1425 289 MobiDBLite consensus disorder prediction 111 148 - -
Acco05g1425 289 FunFam Transcription factor bHLH83 190 249 - -
Acco05g1425 289 MobiDBLite consensus disorder prediction 158 199 - -
Acco05g1425 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 251 IPR036638 GO:0046983
Acco05g1425 289 Pfam Helix-loop-helix DNA-binding domain 200 242 IPR011598 GO:0046983
Acco05g1425 289 CDD bHLH_AtIND_like 193 255 - -
Acco05g1425 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983
Acco05g1425 289 SMART finulus 198 247 IPR011598 GO:0046983
Acco05g1425 289 MobiDBLite consensus disorder prediction 111 203 - -
Acco05g1425 289 Gene3D - 188 249 IPR036638 GO:0046983
Acco05g1425 289 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 76 251 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1425 Acco-ChrAcco05 29948482 29949817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1425 44 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G66470 48.699 1.14e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco05g1425 HLH 9.3e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1425 05 29948482 29949817 Acco05g1425 05 29948482 29949817 CCT
Acco05g1425 05 29948482 29949817 Acco05g1425 05 29948482 29949817 ECH