Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1389 ATGGCTACTTCCTTGGATATGTCACTTGATGATAGAATAAAAACCAGAAGTCATAGGGAGAGGGGTAGAGGGCGAGGCAGAGCCCCCCGTGGCCGTGGAGCAGGTCGGAATCTTGGTGGTGGAAGGATGCCTGGTCCAGCCCGCAGAGCTCCTCTTGGAATTAATTCTCGGCCATCTGCTTATGCCATTGCCAAGTCCATTCGCAGAACCAGGCGTTTTCCATGGCAGCATGATTTATTTGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAATAGAAGTAGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAACGAAGATATAAGGGAACTGTTTGCGGAGATTGGAGACTTGAAGCGTTATGCAGTCCACTATGACAGAAATGGACGTCCTAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCAGCTCTTAAACGATACAACAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGGTTGTTGGTGCCAATGCAGGATTGCCTATATCAGCTCGTGTGAATGTTTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGACCTGGAGCTAGAGCTGGAGGTCGACCTGGAGCTAGAGCTGGAGGTCCTGCTATGTTTAATCGTGGTGCAGGTTGGGGACGGCGTGGTGGTGGAAGGAGCGGTGGTGGGGGCATGCGTGGTCGAGGAGGCAGTGGACGAGGCAGGGGTCGGGGTCGAGGGCGTGGGAAGAAGGATGCAGTTGAGAAGTCTGCTGAGGAACTTGACAAGGACCTGGAGACTTATCATGCTGAGGCCATGCACATCTCCTGA 858 0.5117 MATSLDMSLDDRIKTRSHRERGRGRGRAPRGRGAGRNLGGGRMPGPARRAPLGINSRPSAYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFAEIGDLKRYAVHYDRNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEVVGANAGLPISARVNVSGINGQRKRTVVMTPGGRPGARAGGRPGARAGGPAMFNRGAGWGRRGGGRSGGGGMRGRGGSGRGRGRGRGRGKKDAVEKSAEELDKDLETYHAEAMHIS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1389 285 SMART FoP_duplication_2 212 285 IPR025715 -
Acco05g1389 285 MobiDBLite consensus disorder prediction 199 285 - -
Acco05g1389 285 CDD RRM_THOC4 96 169 - -
Acco05g1389 285 Gene3D - 92 172 IPR012677 -
Acco05g1389 285 MobiDBLite consensus disorder prediction 257 285 - -
Acco05g1389 285 MobiDBLite consensus disorder prediction 1 54 - -
Acco05g1389 285 SUPERFAMILY RNA-binding domain, RBD 23 170 IPR035979 GO:0003676
Acco05g1389 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Acco05g1389 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Acco05g1389 285 Coils Coil 260 280 - -
Acco05g1389 285 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 283 - -
Acco05g1389 285 Pfam C-terminal duplication domain of Friend of PRMT1 226 279 IPR025715 -
Acco05g1389 285 SMART rrm1_1 97 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1389 Acco-ChrAcco05 29352731 29355565 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1389 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 39.474 9.83e-10 57.4