Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1366 ATGGATATTCTATCCGACTTGGGAAATCAATGGGATCGAGTTCCCGATCCTAAACCCTTCGTTCGACCTGGCCAAACAGACAAGAACAACTTAAACCCTTATCCTTTCTTCCGTCCTCCGGCGCCCCCCTTGCGGCCTTCTCCGTCGCGAATCTGCTCTGCATCCCGTCGAGAGCTACTCATCGACGCTTTATCGCCTTGTCCTCCGGTACTTGGTCTTCGTCCCTCAGCTGCTGTTCTTTCCTCGGTTTTGCCTCCGTCTTCACTTCGTCACCGCGCCGTCACTCTCCGTGAAAGCTGTTCTCTAGGTGTGCAGTGTTCCTTTCACCCTCTCTGGAAATTAAATAGGAAAACCATGAGGAAGCTGAAGTTTCATGAGAAGAAGCTATTGAAGAAGGTAAATTTCTTAGAGTGGAAGAGAGAAGGAGGTCACAGAGAAAATCATGTTATGCAACGCTATCATGTTACTGGACGTGATGATTACAAGAAATATTCGACTCTGTGCCGGATGGTGCAAAAGCTAGTAAACATGCTGAAGCAAATGGACCCAAAAGATCCATTTCGGATTGAGATGGCTGATAGGCTCTTAGAAAAGCTGTACAATATTGGTGTGATTCCAACCAGGCAAAGTATTACACTTTGTGAACGTTTAACAGTGTCATCCTTTTGTAGGCGAAGGCTGGCAACTGTTTTGGTGCGATTAAAATTTGCAGAGTACTTGAAAGAAGCGGTGACATACATTGAACAAGGGCATGTCAGAGTTGGTCCAGAGACAGTCACTGACCCAGCATTCCTGGTAACCAGAAATATGGAAGACTTCATCACATGGGTGGATTCATCAAAGATAAAGAGAAAGGTTCTACAGTACAACGACAAATTGGATGACTATGATTTAATGAACTGA 903 0.4529 MDILSDLGNQWDRVPDPKPFVRPGQTDKNNLNPYPFFRPPAPPLRPSPSRICSASRRELLIDALSPCPPVLGLRPSAAVLSSVLPPSSLRHRAVTLRESCSLGVQCSFHPLWKLNRKTMRKLKFHEKKLLKKVNFLEWKREGGHRENHVMQRYHVTGRDDYKKYSTLCRMVQKLVNMLKQMDPKDPFRIEMADRLLEKLYNIGVIPTRQSITLCERLTVSSFCRRRLATVLVRLKFAEYLKEAVTYIEQGHVRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1366 300 SMART Ribosomal_S4_2 121 224 IPR001912 GO:0019843
Acco05g1366 300 SMART s4_6 225 288 IPR002942 GO:0003723
Acco05g1366 300 PANTHER 30S 40S RIBOSOMAL PROTEIN 123 296 IPR022801 GO:0003735|GO:0015935|GO:0019843
Acco05g1366 300 CDD S4 225 293 - -
Acco05g1366 300 FunFam U3 small nucleolar ribonucleoprotein IMP3 225 297 - -
Acco05g1366 300 Pfam Ribosomal protein S4/S9 N-terminal domain 121 223 IPR001912 GO:0019843
Acco05g1366 300 Gene3D - 225 300 IPR036986 GO:0003723
Acco05g1366 300 ProSiteProfiles S4 RNA-binding domain profile. 225 291 - -
Acco05g1366 300 SUPERFAMILY Alpha-L RNA-binding motif 144 293 - -
Acco05g1366 300 Pfam S4 domain 225 271 IPR002942 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1366 158 266 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 30.909 7.78e-09 52.8