Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1359 ATGGTTTTGTCAGGGACGCTAAGGAAAGTTTTCAGACGTGCCCACAAAGGGAAAGCCCTTCCCGGTGGCGAACTCGACTTGGAACCTGTGATTCCGACGCACTTCCGGTGCCCTGTGAGCCTTGAACTGATGAAAGATCCGGTGACTCTGTGTACCGGAATCACCTATGACAGGGACAGCATCGAGAGGTGGATTGAATCTGGGAACACCACTTGCCCAGTGACCAAGCAGGTTCTTTCGAGCACTCACATGATCCCAAATCACGCCATTCGGAGAATGATCCAAGATTGGTGCGTGGAAAACCAGTCTCATGGGATTGAAAGAATCCCCACTCCGAGGATCCCCGTCGCACCGTGCGAGGTTTCGGAGATTTGTTCGAAGATAATCGCCGCCACACGTAATGGAGATGTGAAAAAGTGTCAAGAAATGGTGGGGAAGATTAAGAATTTGGGTAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAAAATGGTGCTTGTGCAGTGTTATCCTCTGCCTTTGATGCTTTCTCACATGGGAACATCGAGGAAAACGAGGTTGTTCTAGAGGAGATCTTGGGGGTACTCCCATGGATGATGAATAATCCATCCCAAGAAGATGCAAGATCCAAATTGAGGTCTGAGACATGTTTGAATTGCTTGGTTTGGTTTCTGAATGGGGACGACCTTTCAGCAAGGCAAAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTATTGCTAAAATTGATGGTGTAATTGAAGCTTTGGTGAAGATGATTAGAGAGCCTATAGGAACAAATGCAACCAAAGCAAGCTTGACCAAGATTTTCCAGTTGGTTTCCTCATCAGATGATGACAAAGAGAGAATCTCACAGAGATTTGTGGAACTGGGTTTGGTTTCTTTGTTGCTGGAGGCCATTGTTGATGCAGACAAAAGCATATGTGAGAAGGCTTTGGGTGTGTTGGATTGCATCTGTGATTGTAAGGAAGGAAAGGAAGTGGCCATGGCTAATGCTCTGACCCTGCCTCTTGCAACTAAGAAGATCCTAAGGGTGTCACCGTTGGCCACTGAGTTTTCGGCGTCCATTCTCTGGAAGCTCTGTGACAAGGAAGATGAAGAGGTTCTCGTCGAAACAGTTCAACTTGGAGCTTTTCAGAAGCTCCTAGTTTTGTTGCAGCTGGGTTGTGAAGAAAGCTTGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCTTATAGAAGCAGAGCGGAATGTGTCGATTCATCCTTGGATTTCAAGTACCTTAAGAAGCCCTTCTAA 1311 0.4661 MVLSGTLRKVFRRAHKGKALPGGELDLEPVIPTHFRCPVSLELMKDPVTLCTGITYDRDSIERWIESGNTTCPVTKQVLSSTHMIPNHAIRRMIQDWCVENQSHGIERIPTPRIPVAPCEVSEICSKIIAATRNGDVKKCQEMVGKIKNLGKESERNKRCIVENGACAVLSSAFDAFSHGNIEENEVVLEEILGVLPWMMNNPSQEDARSKLRSETCLNCLVWFLNGDDLSARQNAAMVLKEMPVRAIAKIDGVIEALVKMIREPIGTNATKASLTKIFQLVSSSDDDKERISQRFVELGLVSLLLEAIVDADKSICEKALGVLDCICDCKEGKEVAMANALTLPLATKKILRVSPLATEFSASILWKLCDKEDEEVLVETVQLGAFQKLLVLLQLGCEESLKEKVTELLKLLNAYRSRAECVDSSLDFKYLKKPF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1359 436 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Acco05g1359 436 FunFam RING-type E3 ubiquitin transferase 31 103 - -
Acco05g1359 436 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Acco05g1359 436 PANTHER WDSAM1 PROTEIN 28 423 IPR045185 GO:0061630
Acco05g1359 436 Coils Coil 399 419 - -
Acco05g1359 436 CDD RING-Ubox_PUB 32 82 IPR045210 -
Acco05g1359 436 Gene3D - 245 425 IPR011989 -
Acco05g1359 436 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Acco05g1359 436 SUPERFAMILY ARM repeat 122 412 IPR016024 -
Acco05g1359 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Acco05g1359 436 SUPERFAMILY RING/U-box 28 107 - -
Acco05g1359 436 Gene3D - 121 244 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1359 Acco-ChrAcco05 28772671 28773981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1359 19 436 U-box Gene Family AT5G37490 49.176 3.16e-128 376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g1359 05 28772671 28773981 Acco05g1359 05 28772671 28773981 CCT
Acco05g1359 05 28772671 28773981 Acco05g1359 05 28772671 28773981 ECH