Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1338 ATGAGCTGGTTTATTATTCTGGAACGAATTATAGAGGATACTAGATTCGAGATCTCTGATTATCGAAAGAGAAGTTTGAATTCCTCCGTTGAATTGTTTTATTGTGTCCATTTCCTATCTGGTCTTGTGATTCTGTGGATAAGAGAAGACAATCAAATCTTACGCGAAGTTAAAGAGTGTTTGGAACTGTCTCACAGGCTGGTGGTTTCTGCAGCTATGGCCATTCATGATCAAATTGGAGTCACCAGATCTCACAGTATTCCAGTAGAAAATGGAGCATCTTTGAGCTCTGGACCACATTCTGCTGCACGGGTTCATCTAAATGATCAGTTTTCTTGTGGGAATGACTATGCACCAAAGGTAAGGAAACCGTATACCATCACAAAACAAAGAGAGAGATGGACAGATGAAGAGCACAAGAAATTTCTTGAAGCTTTAAAGCTGTATGGCCGGGCATGGCGAAAGATTGAAGAGCATGTTGGCACAAAGACTACGGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGATCCTTGTGGGAGCAATATAAACTTGATGGAGTCTGTTGAAATCCCACCCCCACGTCCAAAACGAAAGCCTATGCATCCTTACCCTCGTAAGCTGGTGGAGCTCCCTAACAAAGAAGCCTCCATACCAAAACAGCTAATGATGTCTAATTCTCTGAAATCATCTGATTTTGACCAAGAAAACCAATCTCCCAAGTCAGTGTTATCTGCTGTTGGTTCAGAGACCCTTGGTTCCTCTGATTCTGACACACCAAATGGAAGCCCTTCCCCAATTTCATCCATTAGTCCTGTTCATACCAGCAACTTTGAAGTTGCTGAACCTGAAAACCTACTGGAGGAGGATGTGTGTCCACCATCGGCTGGACTAAATGCTGATCCAACTCCTGATGAGCAACCACTTATGAAGCATGAACAGCCATTGAAACACAGCATATCTACCAAGGAAGATGCTGCAGAAGAATCATCTGCTAGGATTCTGAAGCTTTTTGGGACGACTTTGTTGATAACAGATAACAGTGGGCCATCCTCTCCAACAATGGAAGCATGCAAGTTGATTCACTCGAAATTCTTGCCAATGAAATGTGATGAGAAAAGTTTTCATAATGGAACACATGGTGCTATCTGTAACATGCAGCTTGAGAGTGGAAATTCAGGGCTTGTAGAAGGTCCTTCTGCTTCTTTTGTTCCATGTTGGAGCATTCCCCACATTAGATCACTGCACAAGAAGGTGCCTGAAGGAAAACAACTAGACTCCACTGTTAGGGAAATTGAATATGTAGAAGTTATAAACACTAGCTCTTGTGTAAATAAGGATGAAAAATCTGATAAGGAAGCCATAAGAGATACTAAAGCTATATTTGATCTGAAGAGGTGTGGGAAAGGGTTTGTGCCATATAAGAGGTGCATTGCAGAGAGGAAAAATCAGGCCTTGTCAGTAACTAAAGAGAAGAGGGAAGAACAAAGGATTCGCCTTTCCTTGTAA 1524 0.4186 MSWFIILERIIEDTRFEISDYRKRSLNSSVELFYCVHFLSGLVILWIREDNQILREVKECLELSHRLVVSAAMAIHDQIGVTRSHSIPVENGASLSSGPHSAARVHLNDQFSCGNDYAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTTVQIRSHAQKFFSKVLRDPCGSNINLMESVEIPPPRPKRKPMHPYPRKLVELPNKEASIPKQLMMSNSLKSSDFDQENQSPKSVLSAVGSETLGSSDSDTPNGSPSPISSISPVHTSNFEVAEPENLLEEDVCPPSAGLNADPTPDEQPLMKHEQPLKHSISTKEDAAEESSARILKLFGTTLLITDNSGPSSPTMEACKLIHSKFLPMKCDEKSFHNGTHGAICNMQLESGNSGLVEGPSASFVPCWSIPHIRSLHKKVPEGKQLDSTVREIEYVEVINTSSCVNKDEKSDKEAIRDTKAIFDLKRCGKGFVPYKRCIAERKNQALSVTKEKREEQRIRLSL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1338 507 SUPERFAMILY Homeodomain-like 125 178 IPR009057 -
Acco05g1338 507 SMART sant 130 178 IPR001005 -
Acco05g1338 507 ProSiteProfiles Myb-like domain profile. 126 176 IPR001005 -
Acco05g1338 507 MobiDBLite consensus disorder prediction 190 278 - -
Acco05g1338 507 NCBIfam myb-like DNA-binding domain, SHAQKYF class 129 178 IPR006447 GO:0003677
Acco05g1338 507 MobiDBLite consensus disorder prediction 197 214 - -
Acco05g1338 507 Pfam Myb-like DNA-binding domain 131 174 IPR001005 -
Acco05g1338 507 PANTHER SWI/SNF COMPLEX-RELATED 98 357 - -
Acco05g1338 507 MobiDBLite consensus disorder prediction 311 331 - -
Acco05g1338 507 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 180 IPR017930 -
Acco05g1338 507 Gene3D - 133 179 - -
Acco05g1338 507 ProSiteProfiles SANT domain profile. 129 180 IPR017884 -
Acco05g1338 507 MobiDBLite consensus disorder prediction 295 331 - -
Acco05g1338 507 FunFam protein REVEILLE 6 isoform X1 133 181 - -
Acco05g1338 507 MobiDBLite consensus disorder prediction 224 278 - -
Acco05g1338 507 CDD SANT 133 176 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1338 Acco-ChrAcco05 28268498 28272349 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco05g1338 Myb_DNA-binding 1.6e-13 CL0123