Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1333 ATGGGAGAAGAGTCCTTGACAATATCAACATCAGTCCCCTTTGACAGAGCAGTTGATCAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACGCAGAGGGAAGCCGAAGCTCTGCCCATTCAGACTTTCTCAGGACGAGAAAAATTTGATTTGGTACTCCGGACAGCAGGAAAAACACTTGCGGTTGAGTTCAGTCACAAAAATTATTCAAGGACAGGGAAATATAAAGTCCCAAAAGCTGAATCAAAATGGGAAGGAGTGCCATTCATTTTCTCTAATTTATGATAATGGGGAACACTCACTTGATCTGATATGCAAGGACAAAGCACAGGCTACTTCATGGTTTTTGGGGTTGAAAGCTGTAATTTCTCAGTCCCCATACCAAAAACCTTTTATTAGTTTAAGAAGCTTCAAAGGTATACAGAGCTGTGTCAGTAGTCCAGCTGGAATCTTACGACGAAAGAAAAACCTTGGCCTTCTGGAGGATACTGCTGAGTTTACAAAGGTACACAGCGTATGTGCAAGTCCGACTTTGTCACTTTCAGAGAGGTGCTTTTCTGATGGTTTGTCATATACCTGTGATAGCTTTTACTCATCAGAATCTTTTCCCTCCGATGCTCAAAGGGCAGTTGATATTTCAGTTCCAAATTCTCCCTGTATCGGTCCAGATATTCTTAGCAAGAGCAGATCAACATATGTTGATACAGAATATCAGAAGGATTTGGCCTATAGGTATCTTGTTCCCGCTACCTCTCCACGTGTAGCAAATATCAACATATTGAAAGATGTCATGATCTGGGGTGGCGGTATTGTTGGTATTGCTGTGAGTGGGGATGATCAACTTGTTGACCAGCAAGGAGCTCATGTGCTATTGCCAAAGTTACTAGAATCCACAATGATGTTAGATGTAGAAAACATAGCATTAGGAGAAAAACACGCTTCACTTGTTACAAAACAAGGTGAAGTGTTAAGCTGGGGTGAGGGGAAAGGAGGAAGGTTGGGGTTCAAAATTGATATAGATATAACCTCACCCAAAATTGTTGATTCTCTTACTGGGGTCCACGTAAAGGATGTTGCATGTGGCGAGTATCATACATGTGCTTTAACGAATTCTGGCGAAGTATATGCTTGGGGGAATGATTTTTGTTGTGTTGCAGATCAGTTTGGTGAAGGGAGATCCAAAACTCAATGGATACCACACAAACTCTCTGGCCCTTTTGATGGTATTATTATATCACATGTCACTTGTGGGGAGTGGCATACGGCAATTGTCTCATCGTGTGGACGACTATTTACATATGGGGATGGTACATTTGGAGCTCTTGGGCATGGGAATTCAGGGAGCATTTCTCAACCAAAAGTAGTTGAATCTCTTAAGGGTCTTTGGGTGAGGTCTGTTGCCTGTGGATCATGGCACACGGCAGCGATTGTTGAAGTCATGGTTGACCGGTTTAGGTATAATACTGGTAAGCTGTTCACTTGGGGTGATGGAGAGAAAGGGATGCTTGGCCACACTGATAACACGAGGAAGCTCTTGCCAACTTGTGTTTCACAACTTCTGGATTATGATTTTGTTCAAGTATCCTGTGGAAGAATGTTGACTATAGCACTTTCCAATATGGGTAAAGTCTTCACAATGGGAAGTGCAGTGCATGGACAATTAGGAAATCCGCGTGCCAAGAATAAATCGGTCACAATTGTTGAAGGACTGCTTAAACAGGAGTTTGTGAAAGAGATATCCTCAGGCTCTTATCATGTTGCTGTCTTGACATCTTCCATGAGTATCTATACATGGGGAAAGGGTGCAGATGGACAGCTAGGATTAGGTGACACCGAAGACCGATACTCACCATCTTTTGTTACAGCTCTAAGAGACTGGCAGGTTGAGAGTATTGCCTGTGGACCGAGCAGCACGGCTGCTATCTGTTTGCACAAACCAATTTCCATTAGTGACCAGTCAGGTTGCAGTGGTTGTAAGTTGCCTTTTGGATTTACAAGGAAGAAGCATAATTGCTATAATTGTGGTCTCTTATTTTGTCATCCATGTAGTGGTAAGAAGGTTACTAATGCAGCTCTAGCGCCAAATAAGAACAAGGCTTTTCGGGTTTGCGACCAATGCTTCAATAATAAACAGCTTGGAAGTACGCCTTCAGTTGTGGCATCCAGGTCCAGAAATTATAACTCTCAGAAGTTGCTGAAGAATCAGAACAAGTTTACTGATTTTACTGAAGATAGAGGAGAAGCCACAGTGACACAGGGTCCACTGTTGTCTCTCGGTCAATCATGCTACAAACGAAGCATGCCGGGTGGAAGAAAGGAGTGGAAAAACCAACAAGAAAGCCAGCATAATTTAGAAAATATTTCTTCTGTATATGGTGGAGTGCCGAAATGGGGGCAAGTTTCATGCCCTGCCATGTTTGAAAATTGTACAGAAAGTTCTGTTTCATCATTTAGAAATAAAAAATTAGGTTCTCTTACTCCAGTGAATTCAGAGTCTACTTTATCCAACAATTTGTATGGAGAGAAAGATACCACAAAGTCTGATAATACTCTGATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGAACCCTTGAAGAGCAATGTGAGATAGGAAACCGTAAGTTACAAGGATGTCGTAAAAAGATTGAGGAGACTTGGCTCTTGGCAAAGGAGGAGGCTGCAAAAAGCAAGGCAGCAAAAGAGGTCATAAAAGCATTGGTGTTAAGGCTGCAAACGGTATCAGATAAAACCGTAGCTGGACAAGAAGGAAAGCTTGGGATACCGGAATATCTGTCAAATTTAACACCCGTTCGTACAGATGTCAATTCTCTGAAGTATGGCAATGTGGATAGTCTATCAAATTCCCCTATAGTGTTCTCTGACTCATTAAAATCGAAACTTGCTAGAAGCTCAATCCTTAAAAGTGATAGATCAAAGGACGATTCTCAGTTAAGTAAAGCAGAATCTCATGAAGATAGCTCTGAAGGCTTGAAAATTGAATGGGTAGAACAGTATGAGCCTGGTGTCTACATAACTTTAACTTCCTTGCCATGTGGGAAGAAGGGCCTTAAGAGAGTTAGATTCAGCCGGAAACAATTTTCTGAGAAGGAAGCGGAGCGATGGTGGGAGAGGAATCAAGTGACAGTGTATCAGAAGTATGGGGTTGAAGGCTATATAAAGACAAGCCATAACTGGGAGAAGGACTAA 3225 0.4211 MGEESLTISTSVPFDRAVDQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDEKNLIWYSGQQEKHLRLSSVTKIIQGQGNIKSQKLNQNGKECHSFSLIYDNGEHSLDLICKDKAQATSWFLGLKAVISQSPYQKPFISLRSFKGIQSCVSSPAGILRRKKNLGLLEDTAEFTKVHSVCASPTLSLSERCFSDGLSYTCDSFYSSESFPSDAQRAVDISVPNSPCIGPDILSKSRSTYVDTEYQKDLAYRYLVPATSPRVANINILKDVMIWGGGIVGIAVSGDDQLVDQQGAHVLLPKLLESTMMLDVENIALGEKHASLVTKQGEVLSWGEGKGGRLGFKIDIDITSPKIVDSLTGVHVKDVACGEYHTCALTNSGEVYAWGNDFCCVADQFGEGRSKTQWIPHKLSGPFDGIIISHVTCGEWHTAIVSSCGRLFTYGDGTFGALGHGNSGSISQPKVVESLKGLWVRSVACGSWHTAAIVEVMVDRFRYNTGKLFTWGDGEKGMLGHTDNTRKLLPTCVSQLLDYDFVQVSCGRMLTIALSNMGKVFTMGSAVHGQLGNPRAKNKSVTIVEGLLKQEFVKEISSGSYHVAVLTSSMSIYTWGKGADGQLGLGDTEDRYSPSFVTALRDWQVESIACGPSSTAAICLHKPISISDQSGCSGCKLPFGFTRKKHNCYNCGLLFCHPCSGKKVTNAALAPNKNKAFRVCDQCFNNKQLGSTPSVVASRSRNYNSQKLLKNQNKFTDFTEDRGEATVTQGPLLSLGQSCYKRSMPGGRKEWKNQQESQHNLENISSVYGGVPKWGQVSCPAMFENCTESSVSSFRNKKLGSLTPVNSESTLSNNLYGEKDTTKSDNTLIEEVQRLRAEARTLEEQCEIGNRKLQGCRKKIEETWLLAKEEAAKSKAAKEVIKALVLRLQTVSDKTVAGQEGKLGIPEYLSNLTPVRTDVNSLKYGNVDSLSNSPIVFSDSLKSKLARSSILKSDRSKDDSQLSKAESHEDSSEGLKIEWVEQYEPGVYITLTSLPCGKKGLKRVRFSRKQFSEKEAERWWERNQVTVYQKYGVEGYIKTSHNWEKD 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1333 1074 ProSiteProfiles BRX domain profile. 1005 1060 IPR013591 -
Acco05g1333 1074 CDD PH_PLC_plant-like 16 128 - -
Acco05g1333 1074 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 917 - -
Acco05g1333 1074 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 654 716 IPR017455 -
Acco05g1333 1074 Gene3D - 17 134 IPR011993 -
Acco05g1333 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
Acco05g1333 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 432 IPR000408 -
Acco05g1333 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 598 649 IPR000408 -
Acco05g1333 1074 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 471 481 IPR000408 -
Acco05g1333 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 360 387 - -
Acco05g1333 1074 Coils Coil 853 880 - -
Acco05g1333 1074 Gene3D - 389 486 IPR009091 -
Acco05g1333 1074 Gene3D - 259 388 IPR009091 -
Acco05g1333 1074 SUPERFAMILY PH domain-like 17 127 - -
Acco05g1333 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 494 542 IPR000408 -
Acco05g1333 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 600 646 IPR000408 -
Acco05g1333 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 546 594 IPR000408 -
Acco05g1333 1074 Pfam Regulator of chromosome condensation (RCC1) repeat 433 481 IPR000408 -
Acco05g1333 1074 Pfam FYVE zinc finger 656 714 IPR000306 GO:0046872
Acco05g1333 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Acco05g1333 1074 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1059 IPR013591 -
Acco05g1333 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 597 IPR000408 -
Acco05g1333 1074 SMART fyve_4 648 717 IPR000306 GO:0046872
Acco05g1333 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 656 722 IPR013083 -
Acco05g1333 1074 SUPERFAMILY RCC1/BLIP-II 267 650 IPR009091 -
Acco05g1333 1074 SUPERFAMILY FYVE/PHD zinc finger 655 714 IPR011011 -
Acco05g1333 1074 PRINTS Chromosome condensation regulator RCC1 signature 593 614 IPR000408 -
Acco05g1333 1074 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Acco05g1333 1074 PRINTS Chromosome condensation regulator RCC1 signature 267 283 IPR000408 -
Acco05g1333 1074 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Acco05g1333 1074 PRINTS Chromosome condensation regulator RCC1 signature 535 553 IPR000408 -
Acco05g1333 1074 Gene3D - 488 655 IPR009091 -
Acco05g1333 1074 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1333 Acco-ChrAcco05 28141583 28149150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1333 1006 1064 Major Intrinsic Protein MIP AT1G31880 47.458 5.74e-12 66.6