Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1273 ATGACCATCTTTTTCTTCAACCAAAAGATGCTTCAGCGTCCTAATCTGCTGGTCACCTTCATATTCTGGTCGAGCTGGACTCTTAATGGCGTCGTTTCAGACCCACAGACGAACCTTCTGCACAGGGGGTGCAGCCCGTTCTACCAATATGTCTTGTCCAACTTCTCAACGTTCAGCGAAAACCTCAACACAACCTTTAGAGATATCAGAGAGGAGATCGTGACTCAGAACAAGTACTTCGCCACGGCGCAGCAAGGCAACGGAGACAACCCAGTTTCCACTCTTTTTCAATGCAGAACTTACCTCTCCATACCCGACTGTGTCGCTTGCTTCGATGTAGCTTCTGTTCAAATCCGCAACTGCTCCAACGGAGCACACGGTGCCCGTGTGGTCTACGATGGCTGCTTCCTCAGGTATGAGACCAGTGCTTTCTTTGACCAAACGACGGCGACGTTTAATAATGCCGGATCATGTGGTGGGAATCTGACTAATAATGGAGAAGCGTCTACATTTACTTCATCTGCACAAGAATTGCTAATGAAGCTCCAAACGACAACACCAAAAATCAGTGGTTTTTCCGCAGCCATGAAGACAAAAGTGCCTAATGATAATGGTACAACTATATATGCCTTTGCTCAATGTATTGAAACAATCTCACAAAGTGGATGCTCGGGTTGCTTAAACGCTGCGTCTAGCAATATGCCAACTTGTCTTCCCAGTTCTGATGGTAGGGCTTATGCTGATGGCTGTTTCATGAGATTCTCCATTTCTTCCTTCTTTCCTCATAACCAGACCATCGATATCACTCCCTTGAAAAAGCAAGGTTCAAGCAAGAAAGGGTCCATTATTGGTGGAGTTGTTGGAGGTGTAGCTTTTCTTTTGGTACTTCTTTCATTACTAGCCTGGATCAGACGACCAAAAACCCCTAAGCAAGTTCCAAGAGGAGAGATAACAGGAGCAAGCATGTTAGCCCGCCCAGTTACTTACAGTTATAAGGATTTGAAGTTTGCAACCAAGAATTTTAGTGAAGAAAATAAAGTAGGAGAAGGAGGGTTTGGAGCTGTATTCAAGGGTACTCTAAAAAATGGGAAAGTGGCTGCAATCAAGAAATTAAATTTTCGCCAATTTACGAGGATGGAGGAAGATTTTGAAAGTGAAGTGACGTTGATAAGTAATGTTCATCATCAAAATCTTGTTCGACTTCTTGGATGTTGCAGTAACGGCGACAACAGAATTCTTGTTTATGAATATATGAAAAACAAAAGTCTCGACAACTTCTTATTTGGTAAAAAGAAGGGTTCTCTCAACTGGAAGCAACGATATAACATAATTTTGGGAACAGCAAAAGGGTTGGCTTATTTGCATGAGGAGTTTCATGTTTGCATCATACATAGAGATATAAAGACTAGCAACATCCTCTTAGATGATAATCTACAGCCTAAAATTGCTGATTTTGGATTGATAAGGCTTTTACCCGAGGAAAAATCTCATCTTAACACCAAATTTGCAGGAACATTGGGATACACGGCACCTGAATATCTCATTCATGGCCAATTATCAGAGAAGGTTGACGTCTATAGCTATGGTGTTGTAGTTTTGGAAATTGTTAGTGGTCGACAAAGTCAAGAATTAATCATCTATGGCGATGCTGAGGGTGAATTCCTCCTTCAAAAGGCTTGGAAATTATATGAGAGAGGCATGCACCTAGAGTTGGTGGACAATACTTTAGACCCTACTGAGTATGATGCGGAAGAAGTGAAGAAAATCATAGAGATTGGCTTGCTTTGCACTCAAGCATCTACTGAAGCAAGGCCAATGATGTCTGAAGTAATTGTTTTGCTCCAAAACAAGGATTTATTAGAGAATGTGAAGCCCACTATGCCTATCTTGATTGAAACTAATTAA 1905 0.4173 MTIFFFNQKMLQRPNLLVTFIFWSSWTLNGVVSDPQTNLLHRGCSPFYQYVLSNFSTFSENLNTTFRDIREEIVTQNKYFATAQQGNGDNPVSTLFQCRTYLSIPDCVACFDVASVQIRNCSNGAHGARVVYDGCFLRYETSAFFDQTTATFNNAGSCGGNLTNNGEASTFTSSAQELLMKLQTTTPKISGFSAAMKTKVPNDNGTTIYAFAQCIETISQSGCSGCLNAASSNMPTCLPSSDGRAYADGCFMRFSISSFFPHNQTIDITPLKKQGSSKKGSIIGGVVGGVAFLLVLLSLLAWIRRPKTPKQVPRGEITGASMLARPVTYSYKDLKFATKNFSEENKVGEGGFGAVFKGTLKNGKVAAIKKLNFRQFTRMEEDFESEVTLISNVHHQNLVRLLGCCSNGDNRILVYEYMKNKSLDNFLFGKKKGSLNWKQRYNIILGTAKGLAYLHEEFHVCIIHRDIKTSNILLDDNLQPKIADFGLIRLLPEEKSHLNTKFAGTLGYTAPEYLIHGQLSEKVDVYSYGVVVLEIVSGRQSQELIIYGDAEGEFLLQKAWKLYERGMHLELVDNTLDPTEYDAEEVKKIIEIGLLCTQASTEARPMMSEVIVLLQNKDLLENVKPTMPILIETN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1273 634 CDD STKc_IRAK 347 616 - -
Acco05g1273 634 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Acco05g1273 634 ProSiteProfiles Gnk2-homologous domain profile. 153 259 IPR002902 -
Acco05g1273 634 ProSiteProfiles Protein kinase domain profile. 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1273 634 ProSitePatterns Protein kinases ATP-binding region signature. 347 370 IPR017441 GO:0005524
Acco05g1273 634 Pfam Protein kinase domain 342 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1273 634 FunFam Cysteine-rich receptor-like protein kinase 2 418 622 - -
Acco05g1273 634 FunFam Cysteine-rich receptor-like protein kinase 2 308 417 - -
Acco05g1273 634 Gene3D Phosphorylase Kinase; domain 1 316 417 - -
Acco05g1273 634 SMART serkin_6 341 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1273 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Acco05g1273 634 ProSiteProfiles Gnk2-homologous domain profile. 39 144 IPR002902 -
Acco05g1273 634 Gene3D - 153 259 IPR038408 -
Acco05g1273 634 Gene3D - 41 144 IPR038408 -
Acco05g1273 634 SUPERFAMILY Protein kinase-like (PK-like) 322 614 IPR011009 -
Acco05g1273 634 Pfam Salt stress response/antifungal 158 255 IPR002902 -
Acco05g1273 634 Pfam Salt stress response/antifungal 53 141 IPR002902 -
Acco05g1273 634 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 96 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1273 Acco-ChrAcco05 26446214 26451274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1273 14 632 Receptor kinase-like Gene Family AT1G70520 36.421 5.41e-122 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco05g1273 Pkinase 3.7e-50 CL0016