Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1254 ATGCTTCAACTTCTTAACCTCCTTGTTCCCTTATTCATATTCTTCCCACTCGGGATCCTTAACGGCGTCGTTTCGGAACCACAGACCCATCTTCTTACGAGTCAGTGTAACGCATACTTGATTTCCAACGTATTCCAAGATTCCAACGTCACCGTCTTCAATCAAAACCTAAACGCAACGTTGCAAGACATCAAAGAGCAGATCAGTACTGTCCAGAATAAGCACTTCGTCACCTCACAGCAAGGCACTGGAGGAAACCCTATTGCCACGCTTTTTCAATGCAGAACCTACCTCTCGGTCGCCGACTGTGTGGCCTGCCTCAATGCGGCTGCTGACCGACTCCGGCAATGCCCTGCAGGGACCTCCGGTGCCCATGTTGTCTACGACGGGTGCTTCCTCAGGTTCGATATTAGCAGTAGTTTCCTTGAAGAGACGACTCAAGGCTTCAACATCTCATCATGTGGGAATCAGACTATAGGAGAAGCCATTACATTTACCTCAGAAGCACAACGAATGCTAGTGAATCTCCAAAAAGCAACACCCACAATCACTGGCTTCTCTGCAGCTACAAAGGCGCAAGTGCCTAATGATGGTCTACTGATTTATGGATTTGCTCAATGTATTGAAACTATCTCACAGAGTCAGTGTGAGGATTGCCTGAATTCTCAGTACAATAATATGCAGACTTGTCTTTCCAGTTCAGATGGTTCAAGCAATAAGGGAATCATTATTGGTGGAGTTGTTGCAGGTGTATCTCTTGCTTTGATCCTCATTGCATTATTTACCTTCATTATTATTAGGCGAAGAAAAAACCCTATGATGATCAGTGTTCCTAGAGGAGATATACCAGGAGCAAGCAAGCTAAAAGGCCCAGTTACTTTTAGTTACAATGTTTTGAAGACTGCAACCAAGAATTTTAGTAGAGAAAATAAAATAGGAGAAGGTGGATTTGGAGCTGTATATAAGGGCACTTTGTCGAATGGAAAAGTAGTTGCAATCAAGAAATTAACTTTAAATCACTTCAACAAGATAGATGAAGAATTTGAAAGCGAAGTGAAGCTTATAAGAACATTAGGATACACACCACCAGAGTATGCAATTTACGGCCAATTATCTGAAAAAGTTGATATTTATAGCTATGGTATTGTAGTCTTGGAAATCATCAGTGGTGAGAACTGCAATAACTTAGAGGTTGATGGTGACGAAGAAGGCAAATACCTCCTCCAAAGAGCTTGGAATCTATATGAGAGAGCCATGCACTTAGAGTTGGTGGACAATGCATTCGACCCTAATGATTATGATGCAGATGAAGTTAAAAAAGTCATAGAGATTGCCTTACTTTGCACCCAACCATCTGCAGAGACAAGACCAACGATGTCTGAAATAATGGTTTTGCTCCAAAATAAGGGTTTATTGGAGAATACGAGGCCAACTATGCCTATCTTCATTGAAACTACTTAG 1461 0.4196 MLQLLNLLVPLFIFFPLGILNGVVSEPQTHLLTSQCNAYLISNVFQDSNVTVFNQNLNATLQDIKEQISTVQNKHFVTSQQGTGGNPIATLFQCRTYLSVADCVACLNAAADRLRQCPAGTSGAHVVYDGCFLRFDISSSFLEETTQGFNISSCGNQTIGEAITFTSEAQRMLVNLQKATPTITGFSAATKAQVPNDGLLIYGFAQCIETISQSQCEDCLNSQYNNMQTCLSSSDGSSNKGIIIGGVVAGVSLALILIALFTFIIIRRRKNPMMISVPRGDIPGASKLKGPVTFSYNVLKTATKNFSRENKIGEGGFGAVYKGTLSNGKVVAIKKLTLNHFNKIDEEFESEVKLIRTLGYTPPEYAIYGQLSEKVDIYSYGIVVLEIISGENCNNLEVDGDEEGKYLLQRAWNLYERAMHLELVDNAFDPNDYDADEVKKVIEIALLCTQPSAETRPTMSEIMVLLQNKGLLENTRPTMPIFIETT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1254 486 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Acco05g1254 486 ProSiteProfiles Protein kinase domain profile. 306 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco05g1254 486 SMART tyrkin_6 306 466 IPR020635 GO:0004713|GO:0006468
Acco05g1254 486 ProSiteProfiles Gnk2-homologous domain profile. 147 256 IPR002902 -
Acco05g1254 486 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 357 484 - -
Acco05g1254 486 Gene3D - 30 139 IPR038408 -
Acco05g1254 486 Gene3D - 146 246 IPR038408 -
Acco05g1254 486 Pfam Salt stress response/antifungal 158 235 IPR002902 -
Acco05g1254 486 Pfam Salt stress response/antifungal 48 136 IPR002902 -
Acco05g1254 486 ProSitePatterns Protein kinases ATP-binding region signature. 312 335 IPR017441 GO:0005524
Acco05g1254 486 CDD TM_EGFR-like 240 271 - -
Acco05g1254 486 SUPERFAMILY Protein kinase-like (PK-like) 299 467 IPR011009 -
Acco05g1254 486 Gene3D Transferase(Phosphotransferase) domain 1 357 478 - -
Acco05g1254 486 Pfam Protein tyrosine and serine/threonine kinase 360 464 IPR001245 GO:0004672|GO:0006468
Acco05g1254 486 Gene3D Phosphorylase Kinase; domain 1 282 356 - -
Acco05g1254 486 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1254 Acco-ChrAcco05 25710532 25715087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1254 71 355 Receptor kinase-like Gene Family AT1G70530 27.900 4.13e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco05g1254 PK_Tyr_Ser-Thr 4.3e-06 CL0016