Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1250 ATGATGATTTCAACATCAGGGTTGGTTCAGCAGGGGCATGAAGAGGAGAAGAAGTGTTTGAATTCGGAGCTGTGGCATGCATGTGCTGGACCTCTGGTATTTCTACCTACTGCGGGCACTCGTGTTGTTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCGGCTACAACTAACAGGGAAGTTGATGGGCATATGCCTGATTATCCTAGCTTGCTACCCCAGTTGATTTGCGAACTTCATAATGTCACAATGCACGCTGACGTTGAAACAGATGAAGTGTATGCTCAAATGACTCTGCAGCCACTGACTCCGCAAGAGCAAAAGGAAAATTTTCTTCCCATGGAATTGGGTGTAACAAGTAGGCAGCCCTCAAATTATTTTTGCAAGATATTAACAGCAAGTGACACAAGCACACATGGAGGCTTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTCTTCCCTCCTCTGGATTACTCACAGCAACCACCAGCACAAGAACTAATTGCCTGGGATCTCCATGATGTTGAGTGGAAGTTTCGTCATGTTTTTCGGGGACAGCCAAAACGTCACCTTCTTACAACAGGCTGGAGCGTATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCAACCACAAACTGTGATCCCTTCATCAGTTATATCAAGTGATAGTATGCACATCGGATTGCTTGCAGCTGCTGCTCATGCTGCTGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTTGTCCTTCTGAGTTTGTTGTTCCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCAGTTGGTTTGCGTTTCAGAATGCTATTTGAGACTGACGAGTCAAGTGTTCGCAGATACATGGGTACAATAACTGGAATAGGTGATCTGGACCCTGTTCGGTGGCCAAACTCTCACTGGCGATCAGTAAAGGTTGGTTGGGATGAATCAACAGTAGGAGAGAGACAGCCAAGGGTATCATTGTGGGAAATTGAGCCTTTGACAACTTTTCCAATGTACCCATCTCTATTTCCCTTCAGATTGAAACGCCCATGCTATCCCAGCCCCTCGTTTGTGAATGATGGAAGAGGTGATGTAACTAATGGGCTAATGTGGCTTAGAGGGGGAGCAGGAGAACATAATTTCAACTCTTTAAACTTTCAAAGTAGTAGCGTGTTGCCATGGATGCAGCAGGGGTTGGATCCTGTCTTGTTTGGAAATAATTATAATCAGCAGTACCAAGCATTGTTGGCAGCTGGTATGCAGAACCCAGGAAATGGAGATCTACTGAGGCAACAAATGCTGTATTTTCAACAATCAGGAAACCACAATCCTTTGCAGCTTCATCAACAGCAAGCAATTCAGCAATCAGTCCCATCCAATATTCTGCAGCCACAAGCACAGGTGTTGACTGAGAACTTGTCACAGAACTTTCTTCAGAAATTACCGAACGTTAATAATCAGGAGGACCAAGCACATCAGCAGAATAATACTTATCATGATTCGCTCTTGATTCAAAGTGATCTGTTCCATCAGAGGCAACACTCTAATGCGCCTTCATCATCATATTCAAAACCGGATTTCTTAGATTCAAGCATGAAGTTCTCTTCATCAGTTTCGCCCTTACAAAATGTGGTTGGTTCACTGTGTCCTGAAGGGAGTGGTTGTGGTGATATTTCAAACCTTTCTAGAACCTGTCAATCCACAATGACTGAACGGGTGCCCCAACAATCTCGGACTTCGAAGTGTCCACCTGTGCAGGTCAGTGCCTTTGGCAATTTGATGTCACTAGCACAATATAGTGGAAAAGATTCTGCATCAGCACCTCCACATTGTACTTCAGATGACCCAAATCCTTCTCTCTTTTGTAATATCAATTCATCTGGCCTTGTGCTCCCAACTACTGTCTCCGGTTACACACCTTCATCAATTAATATTGATGCTTCAACTATGCAAATAGGGGATTCTGGATTTCAGGGTCATTCATATGCTTGCACGCAAGATTCATCAGAAATATTGCTGAGTTTTGGGAAGGTTGACTCCCGAAATCAAACCCAGACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGTTCTCTAGACATTTCACGGTTCGGCAGCTATCATGAACTAAGAGAGGAGTTGGCTCGGATGTTTGGAATTGAGGGGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGACATGCTTCTCCTTGGCGACGACCCGTGGGAATCATTTGTCAGTAATGTTTGGTACATCAAAATACTCTCACCTGAAGATATCCAGAAAATGGGAGAGCAAGTGGTGGGACTGGAATCCTTAGGTCATAATGCGGGATAG 2439 0.4416 MMISTSGLVQQGHEEEKKCLNSELWHACAGPLVFLPTAGTRVVYFPQGHSEQVAATTNREVDGHMPDYPSLLPQLICELHNVTMHADVETDEVYAQMTLQPLTPQEQKENFLPMELGVTSRQPSNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIAWDLHDVEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANQPQTVIPSSVISSDSMHIGLLAAAAHAAATNSCFTVFYNPRACPSEFVVPLSKYIKAVYHTRVSVGLRFRMLFETDESSVRRYMGTITGIGDLDPVRWPNSHWRSVKVGWDESTVGERQPRVSLWEIEPLTTFPMYPSLFPFRLKRPCYPSPSFVNDGRGDVTNGLMWLRGGAGEHNFNSLNFQSSSVLPWMQQGLDPVLFGNNYNQQYQALLAAGMQNPGNGDLLRQQMLYFQQSGNHNPLQLHQQQAIQQSVPSNILQPQAQVLTENLSQNFLQKLPNVNNQEDQAHQQNNTYHDSLLIQSDLFHQRQHSNAPSSSYSKPDFLDSSMKFSSSVSPLQNVVGSLCPEGSGCGDISNLSRTCQSTMTERVPQQSRTSKCPPVQVSAFGNLMSLAQYSGKDSASAPPHCTSDDPNPSLFCNINSSGLVLPTTVSGYTPSSINIDASTMQIGDSGFQGHSYACTQDSSEILLSFGKVDSRNQTQTFVKVYKSGSVGRSLDISRFGSYHELREELARMFGIEGEDPLRSGWQLVFVDRENDMLLLGDDPWESFVSNVWYIKILSPEDIQKMGEQVVGLESLGHNAG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1250 812 Gene3D - 291 363 - -
Acco05g1250 812 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Acco05g1250 812 FunFam Auxin response factor 291 363 - -
Acco05g1250 812 FunFam Auxin response factor 706 798 - -
Acco05g1250 812 Gene3D - 706 798 - -
Acco05g1250 812 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Acco05g1250 812 FunFam Auxin response factor 125 229 - -
Acco05g1250 812 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 798 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco05g1250 812 SUPERFAMILY CAD & PB1 domains 706 783 - -
Acco05g1250 812 CDD B3_DNA 126 227 IPR003340 GO:0003677
Acco05g1250 812 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Acco05g1250 812 Gene3D - 125 228 IPR015300 -
Acco05g1250 812 ProSiteProfiles PB1 domain profile. 711 793 IPR000270 GO:0005515
Acco05g1250 812 SMART B3_2 127 229 IPR003340 GO:0003677
Acco05g1250 812 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1250 Acco-ChrAcco05 25659240 25672536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1250 97 803 B3 DNA Binding Superfamily AT5G37020 63.536 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco05g1250 B3 2.1e-19 CL0405