Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1184 ATGGATGCAATAACCTTTTTGAAAGCAGTGAAAACAACATTTGACAGTGACAACGAAACAGAAAGATATAATATGTTCGTTGCAATCTTAAAAGATTTCAAGAACCAAAGGATTGACGTTGCAGGTTTCTTAGCACAGATTAAGGAAGTATTGAGAGGGCATGACTTTTTGATTCTAGGATTAAATGTCTTCATGCCCGAAGGATATGAGATTACTCTTTCTTATGAAGATCAACCTCGTAAAGGGCAAAAGAGGCAAATGAGTGAGAACCCTCCTAACAGTTTTAATAATTTCAAGAAGCCTAAGATGAACGAAACTAAACCCATTCAAGAAATTGATGACCTCAACAAAGGCAAGCGTGGTCACGATAATAATAAGGCTATTAATAAAAAAAATCAGAAGAAGACTCCTGATTTGATGCCTAGAGAAATTGATCTCAACAAATGTGAACGTTATGGTAGCAGCTACGTGTGCTTGCCTGAAGATTACAAGAGCCCTCGAGCCAGTGGGAGATCTAAGCTCGCAGCTTCAGTGTTGAACAATCGTTTTGTGCTGAACCCGCGTCAAGGTGATCGTCAAGGTTCTTCAAAAAGCAAGAAAATGGTCAATGAGAGTCATGAAGCATTGCTCAAGGTTGAAAATGAACAATTTGAAGCAGACATGTTATTAGAGTCTCTAAGCTCAACTAGCGAACATTTCAAGAAAGCGTACCAGAAGATGCGTGAGAATGTGGAGGGTTCTGATCCTTGTATTGAAGATTGCTTTAGGACTTCACATTTGAGAGCAATTGAGCATATGTATGGTGCGCATGGTCTTGAAGCTTTGGAGGCATTACGCGACAACCCAATTGAAGCCGTGCCTTTGATGTTGGGGCGTCTTGAAGAGAAATCTGAGCAATTGAAGCTCTTTCATCTACAACTCAAGGAGGTTTGGGCTCAAGTTTATGCTGAAAAACACGCCAAATCACTTGATTTTCGGTCCTAG 984 0.4014 MDAITFLKAVKTTFDSDNETERYNMFVAILKDFKNQRIDVAGFLAQIKEVLRGHDFLILGLNVFMPEGYEITLSYEDQPRKGQKRQMSENPPNSFNNFKKPKMNETKPIQEIDDLNKGKRGHDNNKAINKKNQKKTPDLMPREIDLNKCERYGSSYVCLPEDYKSPRASGRSKLAASVLNNRFVLNPRQGDRQGSSKSKKMVNESHEALLKVENEQFEADMLLESLSSTSEHFKKAYQKMRENVEGSDPCIEDCFRTSHLRAIEHMYGAHGLEALEALRDNPIEAVPLMLGRLEEKSEQLKLFHLQLKEVWAQVYAEKHAKSLDFRS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1184 327 SUPERFAMILY PAH2 domain 2 69 IPR036600 GO:0006355
Acco05g1184 327 Pfam Paired amphipathic helix repeat 21 64 IPR003822 GO:0006355
Acco05g1184 327 MobiDBLite consensus disorder prediction 76 142 - -
Acco05g1184 327 SMART hdac_interact2seq4b 148 249 IPR013194 -
Acco05g1184 327 FunFam Paired amphipathic helix protein Sin3 2 66 - -
Acco05g1184 327 MobiDBLite consensus disorder prediction 104 142 - -
Acco05g1184 327 PANTHER SIN3B-RELATED 2 327 IPR039774 GO:0003714
Acco05g1184 327 Pfam Sin3 family co-repressor 150 243 IPR013194 -
Acco05g1184 327 Gene3D Paired amphipathic helix 2 66 IPR036600 GO:0006355
Acco05g1184 327 MobiDBLite consensus disorder prediction 85 103 - -
Acco05g1184 327 ProSiteProfiles PAH domain profile. 1 68 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1184 Acco-ChrAcco05 24482035 24483213 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1184 2 77 WRKY Transcription Factor Family AT4G12020 40.789 4.79e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco05g1184 Sin3_corepress 5.3e-18 No_clan