Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1178 ATGGCAGAGGGTAGCGCTACCAACACATATGAAGAGGCTCGGAAGCAACGGCTTGAAGAAAACAGAAAAAGATTTGAGGATCTGGGGATTTTAAAGATTTCAAAAAATTTATCTGCAATTGTCACACCAGAGAAGAAGGCCCCTCCGCTACGTCGACCAAAACAAAAATCAAATAGTAGTGATGTCGTGGAACCAAGACGCTCTTCTCGTGTGCGAAATTCTGTTCCTTCATATCGTGAGGAGGTGTTCATGGACCTTCCATCTATGCGGAAGAGGTCAAGGTCGTCATCATCATCATGGGGAAGTTATATTGCAAGGCCACTAGATGAAATCAAAGAAGCCACAGATGAAGAAAGAAATCGTGCTTTCATGGCTGCAGAAAAACTTCTGAGCAACTTACAGACTTCGAATCCAGCATTTATTAAGTCAATGGTCCGGTCTCATGTTTATAGTTGCTTTTGGTTGGGTCTCCCTACTAGATTTTGCCAAGACCATCTTCCGAAGACTGCCTGCGACATGATTTTAGAGGATGAAAATGGTTCAGAATTTGAGGCTGTTTTACTTGGCAACAGATCAGGGCTTAGCGGAGGTTGGAGAGGATTTGCATTGGATCATAAGTTGGATGATGGCGATGCACTTATTTTTGAACTAGTTGAACCTACGAGATTTAAGATTTACATTGTCAGAGCCTTTCCAGAATCAGCTGAATATGGGCAGGAGATTTTGGATGAAGAAGCTGATACTTGTGCAACCAAGAAGCACAAATCACAATCGAACAAGACACATATTCTTAAAACAAAAGAATCTGCAAATTCTCAGGAACACACAGAAGAAGATAACATTGACAATGAAATCAAGCCACAAGGGAGGAAAACTAGGTTCTCTCAGAGAAAAGCTCAGAAAGAATCCAAAGACTGTAAACTGCTTCCTTCTGATGGTTCAGTAAAGGAAGAAAATATTGAAGAAGGGAAAAAATGTACTAGTGAGAAAGCGAATTCTCGAGGAAACAAGAGAAAGTCAAAATGTGGTAAACGAAATTGA 1041 0.4083 MAEGSATNTYEEARKQRLEENRKRFEDLGILKISKNLSAIVTPEKKAPPLRRPKQKSNSSDVVEPRRSSRVRNSVPSYREEVFMDLPSMRKRSRSSSSSWGSYIARPLDEIKEATDEERNRAFMAAEKLLSNLQTSNPAFIKSMVRSHVYSCFWLGLPTRFCQDHLPKTACDMILEDENGSEFEAVLLGNRSGLSGGWRGFALDHKLDDGDALIFELVEPTRFKIYIVRAFPESAEYGQEILDEEADTCATKKHKSQSNKTHILKTKESANSQEHTEEDNIDNEIKPQGRKTRFSQRKAQKESKDCKLLPSDGSVKEENIEEGKKCTSEKANSRGNKRKSKCGKRN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1178 346 MobiDBLite consensus disorder prediction 47 68 - -
Acco05g1178 346 SUPERFAMILY DNA-binding pseudobarrel domain 133 229 IPR015300 -
Acco05g1178 346 MobiDBLite consensus disorder prediction 249 346 - -
Acco05g1178 346 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Acco05g1178 346 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Acco05g1178 346 MobiDBLite consensus disorder prediction 267 336 - -
Acco05g1178 346 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 53 230 IPR044837 -
Acco05g1178 346 SMART B3_2 140 231 IPR003340 GO:0003677
Acco05g1178 346 Gene3D - 114 231 IPR015300 -
Acco05g1178 346 Coils Coil 8 28 - -
Acco05g1178 346 MobiDBLite consensus disorder prediction 41 74 - -
Acco05g1178 346 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1178 Acco-ChrAcco05 24435269 24439570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1178 10 230 B3 DNA Binding Superfamily AT5G58280 50.199 1.79e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco05g1178 B3 7.7e-16 CL0405