Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1177 ATGTGGCGGTTTTCGCAGAGTCTGTCCGGGAAGAGAACGAAGCTAATCATGGGAAGAAGACCTGCGAGATGTTATCGTCAGATAAAGAACAAGCCATACCCGAAATCTAGATTCTGCCGGGGTGTACCTGACCCGAAGATCAGGATTTATGATGTTGGGATGAAAAAGAAAGGGGCAGATGAGTTCCCTTTCTGTGTTCATCTGGTATCTTGGGAGAAGGAGAATGTTTCAAGTGAAGCTCTTGAGGCTGCTCGTATAGCTTGCAACAAATACATGGCTAAATCTGCAGGGAAAGATTCTTTCCACCTGCGAGTTCGGGTTCATCCCTTCCATGTTCTTCGCATAAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACAGGGATGAGAGGTGCTTTTGGGAAGCCACAAGGAACTTGTGCCAGAGTCAACATTGGTCAAGTGCTTCTGTCTGTTCGTTGTAAGGATAGCAACAGCCACCATGCTCAGGAGGCGCTTCGCCGTGCTAAATTCAAGTTTCCCGGTCGCCAGAAGATCATTGTCAGTAGGAAGTGGGGATTTACCAAATTTAGCCGCGCTGACTATCTGAAGTTTAAGTCAGAGAACCGAGTTGTGCCAGATGGAGTCAATGCCAAGGTTCTTGGGTGCCATGGACCTTTGGCTTTGCGACAGCCTGGAAGAGCTTTCTTGCCAGCCAATGCATAA 711 0.4796 MWRFSQSLSGKRTKLIMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGADEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKSAGKDSFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENRVVPDGVNAKVLGCHGPLALRQPGRAFLPANA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1177 236 CDD Ribosomal_L16_L10e 57 182 IPR016180 GO:0003735|GO:0005840|GO:0006412
Acco05g1177 236 Gene3D Ribosomal protein L10e/L16 17 231 IPR036920 GO:0003735|GO:0005840|GO:0006412
Acco05g1177 236 PANTHER 60S RIBOSOMAL PROTEIN L10 17 229 IPR001197 GO:0003735|GO:0005840|GO:0006412
Acco05g1177 236 NCBIfam 50S ribosomal protein L16 17 190 IPR001197 GO:0003735|GO:0005840|GO:0006412
Acco05g1177 236 FunFam 60S ribosomal protein L10 17 222 - -
Acco05g1177 236 ProSitePatterns Ribosomal protein L10e signature. 124 145 IPR018255 GO:0003735|GO:0005840|GO:0006412
Acco05g1177 236 Pfam Ribosomal protein L16p/L10e 28 182 IPR016180 GO:0003735|GO:0005840|GO:0006412
Acco05g1177 236 SUPERFAMILY Ribosomal protein L16p/L10e 20 189 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1177 Acco-ChrAcco05 24426835 24429487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1177 17 236 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.455 4.54e-142 395