Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1170 ATGGCGATGCTATTGAGGAAAATGTGGGAATCGGTATCGAACCGTTCGTGTTCGGGTTCAAATTCCAACTCGGCGGAACGCATTTGTAGCGTCGTGGATTCGCCTCTGGGTGTGTTCGATCAAATTCCTTCCGATATATTGATCCAAATCCTGAAGCTTCTGGGTCCCAAAGAAGCTGCGAAATTGACTCTTGTTTGCAAAGCATGGAGATGGCTGGCCTCCGATAACCGGCTGTGGATTTATTTCCTTCAGAATTGTCAATTGGAGCCATGGGATGCCATTGTTTTCGCCGAGATCAATTTGAGGTCCGGTCATCCTCTTCCAACCTTAGGCGGTCAGATGGGTCAGCTATCTTTCAAGCGTATATTTGGCCAACGTGAACAAGTTCCTGGTGCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAGTTTGGTTGGAGCAAATATGACCGCCCATCAGGGCGATCGGCTACCTTTTTGGAATTCGGTAACCTCGAGTCTCCAATGTACGCTAGACTTAGACATTTTTTTGCAACTATTTATAGCAGGATGCAGGTTAAGCCAAATACTCAACCAGTTATTGTTTCTATTCCAATATGCCATTATGACGATACTGAATCTGCTAAAGCATCAAGGCGGCAGCTTAAGGAGGCAATATGTGCTGCCCTTTTTGACATGAATGTTCCTGCTATTTGTGCTGTCAACCAGGCCACTTTGTCTCTGTATGCTGCAAAACAAACTTCTGGAATAGCTGTTAATGTTGGTTTTCAGGTCACATCTATTGTTCCAATTCTGAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCAATCAAACTTACAGGATTCCTTAGGGAGCTTATGCAACGGAACAACATGAATTTTGAATCCTTGTACACTGTTCGCACGCTAAAAGAGAAACTGTGTTATGTTGCTATTGATTATGAAGCTGAACGATCAAAAAATACACAAGCATCGTTTGAAGCAGCAGAAGGATGGTTTACACTTTCAGAAGAGCGGTTTCAAACAGGGGAGATCTTGTTCCAGCCTCGTCTTGCTGGATTGCAAACAATGGGTTTGCACCAGGCTGTAGCTCTTTGTATGGACCATTGTCATTCTACAGAATTAGCAGGTGACCCTGACTGGTTTAAGACTGTTGTTTTATCTGGGGGAACTGCATGTTTACCAGGTCTGGCAGAAAGGTTAGATAAGGAACTCCGTGAGTTATTACCTCCCCAGTTGTCCAGTGGAATCAAAGTCATACCTCCTCCATATGGTGCTGATACTGCATGGTTTGGAGCGAGGACCATTGGCAATTTGAGTACCTTTCCTGGTCCCTGGTGTATAAAGAAGAAGCACTTCCACAAGTCTCGTCTCAATCTAATATGGTGA 1407 0.4463 MAMLLRKMWESVSNRSCSGSNSNSAERICSVVDSPLGVFDQIPSDILIQILKLLGPKEAAKLTLVCKAWRWLASDNRLWIYFLQNCQLEPWDAIVFAEINLRSGHPLPTLGGQMGQLSFKRIFGQREQVPGAVIIDGGSGYCKFGWSKYDRPSGRSATFLEFGNLESPMYARLRHFFATIYSRMQVKPNTQPVIVSIPICHYDDTESAKASRRQLKEAICAALFDMNVPAICAVNQATLSLYAAKQTSGIAVNVGFQVTSIVPILNGKVMRKVGVEVVGLGAIKLTGFLRELMQRNNMNFESLYTVRTLKEKLCYVAIDYEAERSKNTQASFEAAEGWFTLSEERFQTGEILFQPRLAGLQTMGLHQAVALCMDHCHSTELAGDPDWFKTVVLSGGTACLPGLAERLDKELRELLPPQLSSGIKVIPPPYGADTAWFGARTIGNLSTFPGPWCIKKKHFHKSRLNLIW 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1170 468 Gene3D - 34 105 - -
Acco05g1170 468 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Acco05g1170 468 PANTHER ACTIN 174 460 IPR004000 -
Acco05g1170 468 CDD F-box_AtARP8-like 39 82 - -
Acco05g1170 468 CDD NBD_sugar-kinase_HSP70_actin 133 277 - -
Acco05g1170 468 SMART actin_3 130 459 IPR004000 -
Acco05g1170 468 SUPERFAMILY Actin-like ATPase domain 131 252 IPR043129 -
Acco05g1170 468 Gene3D - 237 434 - -
Acco05g1170 468 Pfam Actin 179 456 IPR004000 -
Acco05g1170 468 SUPERFAMILY F-box domain 37 92 IPR036047 GO:0005515
Acco05g1170 468 Gene3D - 178 459 - -
Acco05g1170 468 Gene3D Actin; Chain A, domain 4 280 362 - -
Acco05g1170 468 SMART fbox_2 42 82 IPR001810 GO:0005515
Acco05g1170 468 Pfam F-box-like 40 79 IPR001810 GO:0005515
Acco05g1170 468 SUPERFAMILY Actin-like ATPase domain 247 457 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1170 Acco-ChrAcco05 24344343 24350724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1170 179 458 Cytoskeleton Gene Families AT3G12110 31.724 8.45e-40 145