Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1165 ATGGATCCTGCTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATATGATGAAAGGTTTATAGATGAAAGGTACTCAAGGGATACTATATACCAGAGAGGTGCCTTTCACCGTGATGGTTTGGATAGGGAGGCATATCCTCCATCAGGACCTGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAGGAGTATTTGCTGGACAAGGAATCTAGACATCTTCAGAGGCCTTATTATGATTCATATCAGCAGATTGATGCTTTCAGAGATAGGGAGGTTGACATGTATCCAGAATTTGAAAAATTTCGAGATGGCTATGCTAGCATTGAAAACTATGATGATAGAGGATATGATAAACCTGGTAGGTTTGGGGGTCATGATCGGGATGACTATGCATATGATGATTATGGCTATAGGTCTCGTGCATCCAGTCATTATAGGGAGGATAGCCATGATAGGGATATTGATCATGTCCGTCATAGTCATGATTCTGATTATGGGAGAGGTAGAAGAGATAGCAATTGGAGGCGACGTGAATCTCGTGACCGGGAACATGATAGAAGATATCCAAGCAGGGAAAGAGATTTGAGTCCACGTAAGAGGCATGAGCGGTCTAGGTCCCGTTCTCGGTCTTCGTCTCAATCTCGATCTCGATCCCACTCTCATTCTCATTCACGCTCTCGTTCCCAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCGAAGTCATGGTCGAAGCTATCAAGAAGATAGCTATCCTGATAGTCGGTATGAGAGAAGTGAAAAGCGAAGGGATCGTGAAGAGAAGAGGCGTGATCATTATTCAGTGGCTCCATCTGCTACTGTTGTTGTTAAAGGTCTTTCACAAAATGCCAACGAAGAAGATCTATACCAGATTCTTGCGGAATGGGGCCCACTTCGGCATGTTCGTGTTATAAAGGAGCGAAATTCTGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGGGCAATGATGGACAAACTCGGAGATGATGGTCTTGTCGTGGATGGTAGAAGACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCTGGTCATAATCATAAAAGCATTACAGTACCATCTGATTGGATGTGCACCATATGTAGTTACATCAATTTTGCCCGACGGACATCCTGCTATCAGTGTAATGAACCACGAAGTGAGGATGCTCCTGCAGCAGATATTACTTTGTCAAATCCAACAGCCTTAGGAAAGAAAGGATCAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGCTATGAATTCTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCATTTGTACATTTTTATTCGGTGGAGAATGCCACCAAGGCTCTTGAAGCAACAAATGGAACAGCCCTTGAGAAGAACGGACAGATTTTAAGAGTGGCATATGCAAAAAGTATCCTGGGTCCTGGATCAGGAACGTCAGGGGCTTCCCAGTCAAGTAGTTTAGCAGCTGCTGCAATTGAGGCCGCAACATTTGCTCAGCAGTATGATTCTGTCGGATGGGCTCCTAAAGAATACAATCCAGATGACAAGCAATCTACTGGTCAAGAGCAAACTGGTGCAGCTCAGACAGATGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCTTACGATCACAATACTCAACAATATATCCCTTGCACTGATCAAACTGAGAATAAAGCTCCTAATAATCAGTCTGAACCTTCCAAGGTGTCTGGCAGTTCCAGCAGTAAAAAAGTTATAATTTCTGCACCTGCTACTACTGTTACATCTGCTGAGAAGCCAGCTTCTTTGGCAGACGCAGTTCAAGCTGCTGCAACTGCTGCCATAGCTGCAGAGAAGAAAGAAAAAGAAAAATTGAAAGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGAGTCAAGCTACTCGTGTAGCTCTTGAAGACAATCACCAATCCACATCCATTGATGATAGGTCTTCAGGATATCCCACAAAGAGCAAGTTCAAGAATGATTTTGCAGATACAAGGGAGAATAATGCGTCCACTTCAGGGATTCCCACTGCCCCTGCTTCTCAGGCTGTTGCTACTGATTCTCAGGTTCAGCCACGACCTATTAGTAATAGCCTTGGAGGCACTCTGATGGGGGTTATAAGAGGCTCTGGAAGAGGGATTATTAAATCTGATAGTTCTTACTCAGGACCTACAGCTTCAGCTGCTGCATGTGCATCAGGAGCCTCTTCATCAAGTGTAGATGCTCCAACAGTTGGAACTCCCTTTAGAACAGATGTCTCTGCACTGGGTTCATATGCCTCTCCTGCCACTGGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCCCCCAAGGAACAACCACAGACAACCTACAGGGATCGTGCAGCTGAGAGAAGAAGTTTGTATGGTTCATCATTGTCAGTTGGGGATGAGTTGGCTGATCTGGAATCTGGGGATCCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGTGTGGTTGGAGATGCCAACCTTAATACCTACGAGGTGATTACAGCTGACAAAGCTATTGATGAGAACAATGTTGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGCCTAGGTAAGGATGGAAGTGGAATGACAGAGCCTGTCCAGGCACAAGCCGCAGATAGTAGAGCAGGACTTGGAAGTCGGCAGAAAAAGTTGGACCATAGCCTTGAGGTTCAGGCAGGAGATAGTTACAAGACGCTTATTCACAAGAAAGCACTCGCCAGATTTTGGGAAATGTCGTAG 3213 0.4507 MDPARYGLHQGWDNNSALEGYGAAHEPNYRVGGSYDERFIDERYSRDTIYQRGAFHRDGLDREAYPPSGPAVGHWSESKRRGYDEEYLLDKESRHLQRPYYDSYQQIDAFRDREVDMYPEFEKFRDGYASIENYDDRGYDKPGRFGGHDRDDYAYDDYGYRSRASSHYREDSHDRDIDHVRHSHDSDYGRGRRDSNWRRRESRDREHDRRYPSRERDLSPRKRHERSRSRSRSSSQSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGRSHGRSYQEDSYPDSRYERSEKRRDREEKRRDHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKLGDDGLVVDGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKSITVPSDWMCTICSYINFARRTSCYQCNEPRSEDAPAADITLSNPTALGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVENATKALEATNGTALEKNGQILRVAYAKSILGPGSGTSGASQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGQEQTGAAQTDALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHNTQQYIPCTDQTENKAPNNQSEPSKVSGSSSSKKVIISAPATTVTSAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHESQATRVALEDNHQSTSIDDRSSGYPTKSKFKNDFADTRENNASTSGIPTAPASQAVATDSQVQPRPISNSLGGTLMGVIRGSGRGIIKSDSSYSGPTASAAACASGASSSSVDAPTVGTPFRTDVSALGSYASPATGGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDELADLESGDPNRDFASRKGDPMPFPPGVGGGRVVGDANLNTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVQAQAADSRAGLGSRQKKLDHSLEVQAGDSYKTLIHKKALARFWEMS 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1165 1070 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 387 IPR000504 GO:0003723
Acco05g1165 1070 MobiDBLite consensus disorder prediction 250 301 - -
Acco05g1165 1070 CDD OCRE_SUA_like 611 662 IPR035623 -
Acco05g1165 1070 MobiDBLite consensus disorder prediction 132 224 - -
Acco05g1165 1070 ProSiteProfiles G-patch domain profile. 994 1040 IPR000467 GO:0003676
Acco05g1165 1070 MobiDBLite consensus disorder prediction 797 830 - -
Acco05g1165 1070 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 548 IPR000504 GO:0003723
Acco05g1165 1070 CDD RRM1_RRM2_RBM5_like 466 546 - -
Acco05g1165 1070 MobiDBLite consensus disorder prediction 132 301 - -
Acco05g1165 1070 MobiDBLite consensus disorder prediction 882 924 - -
Acco05g1165 1070 SMART G-patch_5 992 1038 IPR000467 GO:0003676
Acco05g1165 1070 Gene3D - 272 409 IPR012677 -
Acco05g1165 1070 SUPERFAMILY RNA-binding domain, RBD 302 403 IPR035979 GO:0003676
Acco05g1165 1070 MobiDBLite consensus disorder prediction 586 608 - -
Acco05g1165 1070 SMART zf_4 415 439 IPR001876 -
Acco05g1165 1070 SUPERFAMILY RNA-binding domain, RBD 466 555 IPR035979 GO:0003676
Acco05g1165 1070 Gene3D - 410 443 - -
Acco05g1165 1070 ProSiteProfiles Zinc finger RanBP2 type profile. 413 442 IPR001876 -
Acco05g1165 1070 ProSitePatterns Zinc finger RanBP2-type signature. 417 436 IPR001876 -
Acco05g1165 1070 PANTHER RNA-BINDING PROTEIN 203 1066 - -
Acco05g1165 1070 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 470 535 IPR000504 GO:0003723
Acco05g1165 1070 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 369 IPR000504 GO:0003723
Acco05g1165 1070 SMART rrm1_1 308 383 IPR000504 GO:0003723
Acco05g1165 1070 SMART rrm1_1 469 544 IPR000504 GO:0003723
Acco05g1165 1070 MobiDBLite consensus disorder prediction 663 687 - -
Acco05g1165 1070 Pfam OCRE domain 613 661 IPR041591 -
Acco05g1165 1070 SUPERFAMILY Ran binding protein zinc finger-like 407 443 IPR036443 -
Acco05g1165 1070 MobiDBLite consensus disorder prediction 225 249 - -
Acco05g1165 1070 Pfam G-patch domain 995 1037 IPR000467 GO:0003676
Acco05g1165 1070 Gene3D - 451 573 IPR012677 -
Acco05g1165 1070 MobiDBLite consensus disorder prediction 770 834 - -
Acco05g1165 1070 MobiDBLite consensus disorder prediction 941 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1165 Acco-ChrAcco05 24261676 24269064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1165 973 1039 C2H2 Transcription Factor Family AT5G26610 41.791 2.16e-09 58.2