LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g1044	ATGTGTTCAAGAAGGACCCTAGTTCTGTTCTTTCTCTTCTTGTTCTTCTTTCTGAACCCAACAGTGTTGTCGCAAAACCTCACATTCGAATTTTCTTCCTTCACGTCTCTCCGGAACATCACTCTCGTCGGCGATTCCTTTCTCAGGAACGGCATCATCGGCCTCACCAGATTGTCCGACGTGCCCACTTCCAGCGCTGGAGCCGTAATCTACAACAATCCCGTTTCTCTCTTCGACCAACAATCAAACACTTCATCTTCATTCTCAACATCATTCTCTTTCTCCATCACCGATAACCTGAACAATCCTCCTTCCCTTGTGGATGGTTCCTTATCTTTCTTTCTATTTCCTAGCAACCACACCCTTGGGAGTATCGGCGGGTTTGTGGATCCTCTCAATTCCTCCCAATTAACCCGATCCAACTTTGTTGCGGTCAAATTCAACCCTAATGATAATCGAGTTGAGTTGGATCTAAACGGAATTGCTTCAATCAATGCCACCGGGGATACCATCTCACAGGGAATTGATCTTAAGAGTGGGGAATTGATCACAGCTTGGATTGATTACGAGAGTGAAAAGAGGAAGCTACAAGTGTCCCTGAGTTATAATAATTCGAGTTCAAACTTGAAGACTGAGAACCCAATTCTGAAGGTTGATGATCTTGACTTTTCAGGGTATATCAAGGAGATAGTGTACGTGGGATTTGCTGCTTCCACTGAGGGAAGCACTGAGCTTCATCATATTGTGGACTGGAGATTTCAAAGTAATGGATCTCTACCTTCAAAGTTTCGTACTCATAACGCCTCTAATAGCTTTGTGAGTGCAATAGTGGATGTTCATAATAGGTCCCATAATAATTCCAGCAACAAGCATGATAAAAGGCTTGGATTAATTATAGCCATTGCTGGTCCAGCTTTTTTCTGTGTATTCCTGGTATGTTTGGCCTATATTTCTGTACGGAAAAGGAGGAATAGCAGAACACTGAAGAGAGTGAAAAGTGAGTTGATGGCTTGTCCTAGAGAATTTAGTTACAAAGAATTGAAAGTAGCCACAAAAGGGTTTCACTCAAGCAGGATCTTGGGCCAAGGATCGTTTGGGACAGTTTATAAAGCCTTGTTTCTACCATCAGGAACCATTGCTGCTGTGAAAAGGTCAAGGCACTCTCATGATGGAAAAACAGAATTTCTAGCTGAACTTTCCATCATAGCTGGTTTGAGGCACAAGAATTTGGTTCAGCTCCAAGGTTGGTGTGTTGACAAGGGAGAACTGTTGCTTGTGTATGACTTCATGCCCAATGGAAGCTTAGATAAGATGCTCTACCAAGAATCTGAAGAGAGCCAGAACTTGTTGAACTGGTCTCGTAGACTTAATATTGCTATTGGGTTGGCTTCTGTTCTGATTTACCTCCATCAAGAATGTGAAAAAAGAGTCATTCACAGAGACATTAAGACTGGAAACATATTGCTAGACGCGAATTACAACCCAAGGTTGGGGGATTTCGGACTGGCGAAGCTGATGGATCATGACAGAAGCCCAGTTTCAACATTAACTGCAGGAACCATGGGGTATCTTGCACCTGAGTATCTTCAATATGGGATGGCTACTGAGAAAACTGATGTTTTCAGCTATGGTGTGGTTATTCTCGAAGTGGCATGTGGGAGGAGACCAATCGTAAGGGAAGGCCAAAACATGGTCAATTTGGTTGATTGGGTTTGGGGGCTACACTCTCAAGGGAAGATAATTGAAGCAGCTGATAAAAGGTTGAATGGAGAATTTACAGAGAAAGAGATGAAGAAACTTTTGCTTTTGGGATTGAGCTGTGTAAACCCAGATAGTGCTGGAAGGCCTTCCATGACTAGGGTTTTGCAGATTCTCGGCAACAACGATGAAGCAACAAGCACACTTATTGTGCCAAAGGTGAAACCATTCCTCACTTTCTCCAGTGGCTTACCTTTGAGTCTTGATGAGATTGTTTCAGATAGTGATGTGGAGTTCAGTACTGAGAAGTCCTTGCGTGAGATAAGAATTGACTGA	2034	0.4302	MCSRRTLVLFFLFLFFFLNPTVLSQNLTFEFSSFTSLRNITLVGDSFLRNGIIGLTRLSDVPTSSAGAVIYNNPVSLFDQQSNTSSSFSTSFSFSITDNLNNPPSLVDGSLSFFLFPSNHTLGSIGGFVDPLNSSQLTRSNFVAVKFNPNDNRVELDLNGIASINATGDTISQGIDLKSGELITAWIDYESEKRKLQVSLSYNNSSSNLKTENPILKVDDLDFSGYIKEIVYVGFAASTEGSTELHHIVDWRFQSNGSLPSKFRTHNASNSFVSAIVDVHNRSHNNSSNKHDKRLGLIIAIAGPAFFCVFLVCLAYISVRKRRNSRTLKRVKSELMACPREFSYKELKVATKGFHSSRILGQGSFGTVYKALFLPSGTIAAVKRSRHSHDGKTEFLAELSIIAGLRHKNLVQLQGWCVDKGELLLVYDFMPNGSLDKMLYQESEESQNLLNWSRRLNIAIGLASVLIYLHQECEKRVIHRDIKTGNILLDANYNPRLGDFGLAKLMDHDRSPVSTLTAGTMGYLAPEYLQYGMATEKTDVFSYGVVILEVACGRRPIVREGQNMVNLVDWVWGLHSQGKIIEAADKRLNGEFTEKEMKKLLLLGLSCVNPDSAGRPSMTRVLQILGNNDEATSTLIVPKVKPFLTFSSGLPLSLDEIVSDSDVEFSTEKSLREIRID	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g1044	677	SMART	serkin_6	354	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g1044	677	Gene3D	-	24	257	-	-
	Acco05g1044	677	FunFam	L-type lectin-domain containing receptor kinase VIII.1	318	429	-	-
	Acco05g1044	677	PANTHER	-	41	627	-	-
	Acco05g1044	677	SUPERFAMILY	Protein kinase-like (PK-like)	338	642	IPR011009	-
	Acco05g1044	677	Pfam	Legume lectin domain	27	260	IPR001220	GO:0030246
	Acco05g1044	677	Gene3D	Phosphorylase Kinase; domain 1	315	429	-	-
	Acco05g1044	677	Pfam	Protein kinase domain	354	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g1044	677	CDD	STKc_IRAK	360	625	-	-
	Acco05g1044	677	ProSiteProfiles	Protein kinase domain profile.	354	644	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco05g1044	677	ProSitePatterns	Protein kinases ATP-binding region signature.	360	383	IPR017441	GO:0005524
	Acco05g1044	677	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	257	IPR013320	-
	Acco05g1044	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Acco05g1044	677	Gene3D	Transferase(Phosphotransferase) domain 1	430	638	-	-
	Acco05g1044	677	FunFam	L-type lectin-domain containing receptor kinase VIII.1	430	646	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g1044	Acco-ChrAcco05	21873805	21875838	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g1044	3	662	Receptor kinase-like Gene Family	AT5G55830	55.621	0.0	723

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Acco05g1044		Pkinase	1.4e-48	CL0016