Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0972 ATGAATAACCCAAGGACCCCGCCTGGAGCGCATTACCGACTCGGGGTTTTCGTACCTGTTGAATTGTCGACGCAAACCAGACGGTCTTCGTTTTCTTTGAGACATATCGCTGATTTCTCGTTTCCATTTCCTTTCTTTCTATTTCAGCGGTTCCTTCACAACAGGTTTCGATTTTCTGAAATGAATCATTCGGACATTGAAAATATTGATGAAGCTAGTATGAATTGGGAACACGCTCTGAGTCAGTATGAAATGGTGATGTGCTCCGGGACTAAGAATATGCAAATAGAAGCCTTGATGAAGCTAGCCCGTCTCTCTAAACATGCCCCTGAGAGTTTATTAGTTCGCATTATACCCAGTCTCATTGAGAATCTCGATGATTACCATTCATTTCATTCAAGTTGTTCTCTTCAAAAGGCTTCTGCTTATTGCTTAAAATGTATAGCTTGTAGAGGTGATGGTGGGTTGGCAAAGGAAATAGGTAGACGTGGTGCGGCAAATTCTTTGTTATGGTGGTTGTCACATTCTAATGGGCAGTTTCTAGAAGTCCTGATAAAATGTTTGCTTGTTGTTGTTACCTTTTGTGATTCAAGTCGTGCAGTTGTTGCTAGTAATGGTGGCGTAGATGTTATAATCAGTTTGTTAGATTCTTGTACAAGTGATATTAGGCTATACCTGTTGGAAATTTTGAGTGCATTGTCATTGCTGAGGGATGTTAGGAGGGCCCTCACTAGATTAGGAAGTCTTAAATTTCTTGTGGAGGCTGCTAGCTGTGGTAGCATGGTTTCTAGGGAAAGAGCTTGTCAAACAATCGGGTTACTTGGTGTCCCAAGACGGGCCAGGCGTACGCTAGTTGAACTAGGAGTGATTCCAGTACTTGTTGAGTGTCTTCGTGATGGAGATCACACCATGAAACTTGTGGCTGGTAATGCCCTTGGTGTGATCTCTGCTCATATTGATTATATTAGATTAGTTGCTCAATCTGGGGTCATCTGTCTCTATGCTGAGCTTCTTCAAGGACATGACCCTTCTGGTAAGGAGATTGCTGAGGATGTATTTTGTATATGGGCTGTAGCTGAGGAGAATGCTGTTGAAATCACCAGACATTTGGTGAGAATTCTTAGAGAAGGAGATGATGAATCAAAGGCATCTGCTGCTGATGTGTTATGGGATCTGGCAAGTTACAAGCACACAACATCTATGATCCGGGAATCAGGTGTGATTCCAATTCTGGTTGAGCTTCTGCAGAATGGAAATGAAGAGATAAAGCAGAATGTTTCCGGAGCGTGTGCTCAACTGAGTTATGATGAGGCAGATAGAATGGCACTTGCTGAAGCAGGGGCAATCCCAATTCTCATCGAAATGATGCTGCATGATGGGTTGGAGGAAGTAAGGGATAATGCAGCTGAGGCCCTTGTCAACTTTGCTGAAGATCCTTTGTACCATGATAGAGTATCTGATGCAATAAGTGCTCCTTCATTTAGAGATATGCAGAACAGATTACTTCACATTCGTGCTTCAAATGAGCATATGGCTAGATCGTTACGTAGGATGACTGATTGGCAGCTCACATGGAACCCTGATCTTACTTAA 1593 0.4275 MNNPRTPPGAHYRLGVFVPVELSTQTRRSSFSLRHIADFSFPFPFFLFQRFLHNRFRFSEMNHSDIENIDEASMNWEHALSQYEMVMCSGTKNMQIEALMKLARLSKHAPESLLVRIIPSLIENLDDYHSFHSSCSLQKASAYCLKCIACRGDGGLAKEIGRRGAANSLLWWLSHSNGQFLEVLIKCLLVVVTFCDSSRAVVASNGGVDVIISLLDSCTSDIRLYLLEILSALSLLRDVRRALTRLGSLKFLVEAASCGSMVSRERACQTIGLLGVPRRARRTLVELGVIPVLVECLRDGDHTMKLVAGNALGVISAHIDYIRLVAQSGVICLYAELLQGHDPSGKEIAEDVFCIWAVAEENAVEITRHLVRILREGDDESKASAADVLWDLASYKHTTSMIRESGVIPILVELLQNGNEEIKQNVSGACAQLSYDEADRMALAEAGAIPILIEMMLHDGLEEVRDNAAEALVNFAEDPLYHDRVSDAISAPSFRDMQNRLLHIRASNEHMARSLRRMTDWQLTWNPDLT 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0972 530 Gene3D - 65 366 IPR011989 -
Acco05g0972 530 Pfam HEAT repeats 368 472 - -
Acco05g0972 530 SUPERFAMILY ARM repeat 369 484 IPR016024 -
Acco05g0972 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 406 448 IPR000225 GO:0005515
Acco05g0972 530 SMART arm_5 351 394 IPR000225 GO:0005515
Acco05g0972 530 SMART arm_5 395 435 IPR000225 GO:0005515
Acco05g0972 530 SMART arm_5 195 235 IPR000225 GO:0005515
Acco05g0972 530 SMART arm_5 277 317 IPR000225 GO:0005515
Acco05g0972 530 SMART arm_5 436 477 IPR000225 GO:0005515
Acco05g0972 530 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 370 487 - -
Acco05g0972 530 Gene3D - 367 514 IPR011989 -
Acco05g0972 530 SUPERFAMILY ARM repeat 63 394 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0972 281 479 U-box Gene Family AT2G23140 28.155 9.78e-12 65.5