Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0971 ATGAAGTTGATGGGGAAGAACAGAACAGATAGGAACCGAAGGAGGAAGAGGAAGGTGATGGGTGATGTGAGAGTGAAGGAAGAATTGATTACGTGGAGGCCATTTTCACTGAGTGGAATGATAAGCAAGGGGTTACCGGTCAGGCATTCTACAATTCCTCCCTCTATCTGGATCATTGGCGGAGAGAGGTTGGCGACTTCAACTTACAAGAGAGCGAGACAAGGCCAAGTGTTTAGGCTTCAGACTTTGGTTTGTATACCATTAGCGAATGGGGTGGTGGAGTTGGGATTCACCAAGCCAATTCAGTTTGAGACCCACTGTTCCCCGAATCAATGTTTAAAAGGACATGAAATATGGCGATTCTGTGAGGGTGAAGAAAGAGAGGGATTAAGGACTGAAGTCCATTCATGGAGAAGTTATAGAGAGTGTGTCGAATTTTTTCAAAGATGGCGAGTTGAAGCACTTGCTGAAACACAGTGTGTCTTCTTCTTGTTTTATTGGAGATATTTTGATATGATTAGATACATAATGGATATATCAGACTACACAAGAATAGTTTTGGATAAGATTCAGAAATTTGAACCAGAAGATGCCACAAAGATCATTGGTTATCTCCTTTTCCATGACCTTGGAGAGCAGGGATTGGCTGAATTGGCTTCATGCTCTGACTATACAATTAGCCAAATCGCCTTTATGGTGAAAACTGAGCTACAAAATTTGGCTGCTAAATCTGCCATACTTTCAAGCTCACCTCCTATTAACCCTCAGACAGGTATACGACTTTCGCCCATAATCTCCCCAAGAACAACAACTCCATCAAGCTTTCAGGTTCATCCCTCTAGATTTTTAGAGCCACCGTCAGCTAACAGTATTAACCCAGAATTAATGTCAATTGGTGACAAAGATTCAATCCTGGAACGTCAAAAACAGACGCAGCTTTTGTGTGCAGAGAATCTCATAGATCCTTCTAATAATGCTGGTGCTGCTGTGATTGCCAATGGATACTTTAGATTAGACTCTTTGAAAATGAATTTGAATGGAAAATCCGGTAGGAGGTTCGGTGTGTCTGAATTTCCGGTCAAGACATGTCACTATTTCAACAAAGGATACTGTAGGCATGGAAGTAGTTGTAGATACCATCATGGACAAGTTGCACCACCTGAGAGCTTCTCCCAGATGAATGGGAATGGTGGCGATGATCAGGGAGCATTGCCGGGCTCGCTCGCACAGTTAGAGGCTGACCTTATTGAGCTTCTAAGGCCAAGGAGAGGCAGTCCTATTTCCATTGCTTCCCTGCCAATGTTATATTATGAGAAATACAAAAGAGTGCTTCAGGCAGATGGTTATCTAACTGAGAGCCAGAGACATGGTAGATCGGGATATAGCTTAACGAAGCTTCTTGCACGGCTGAAAAATAGTATACAACTGATTGACAGACCTCATGGGCAGCATGCAGTGGTTCTGGTGGAAAATAGGTACAGGGAAAAAGGAGATCCCAGTCAAAATCTAAGCGTTTTGAGACAATTATATATGACATTTCCGTCAGAAAGTTCTTTCACAGAAGAGGATGTCTCAGACTACTTCAATTCCTTTGGGCAGGTTGAAGATGTAAGGATTCCACCCCAACAGAGAAGGATGTTTGGTTTTGTAACATTTGTTGATCCTGAAACTGTTAAAACAATATTGGAAAAAGGAAATCCCCACAATGTATGTGACTCTTTCGTGCTTGTGAAACCTTACCGGGAGAAGTCAAAGCCTATATACAGGAAACATTCGGAGAGAATTGAGCCTTCATTTGTTTGTTCACCTCGTTATGTGGATAAGGACTTTGAACTTACCCCAACGCCAAGTTATGGGAACCATAGATTTCTGAGGAGGCAGCTCATGGATGAGCAAGAACAGGTCCTTGAATTTCAGAGAAAACAGCATCTTGCAGAGCTACTACTGACCCAAAAACCTCTGTCAACTTCACCTCATTTTGGAAGCTCCTTGGGCCAGTTCAATGTTTCAGATCATTTCAATTTTCGGTCTGCAGAATTTATCAGTTACGCTCTGAATGACAAGACTGGGCATACAGACACCAGATTTGCCGATGAAGACAGGGGTGAAGGAATTGATCTGCCAGAGAGCCCATTTTCATTTCCAGTTGATAGTGGAATTCCAACAGTAATGTAG 2175 0.4253 MKLMGKNRTDRNRRRKRKVMGDVRVKEELITWRPFSLSGMISKGLPVRHSTIPPSIWIIGGERLATSTYKRARQGQVFRLQTLVCIPLANGVVELGFTKPIQFETHCSPNQCLKGHEIWRFCEGEEREGLRTEVHSWRSYRECVEFFQRWRVEALAETQCVFFLFYWRYFDMIRYIMDISDYTRIVLDKIQKFEPEDATKIIGYLLFHDLGEQGLAELASCSDYTISQIAFMVKTELQNLAAKSAILSSSPPINPQTGIRLSPIISPRTTTPSSFQVHPSRFLEPPSANSINPELMSIGDKDSILERQKQTQLLCAENLIDPSNNAGAAVIANGYFRLDSLKMNLNGKSGRRFGVSEFPVKTCHYFNKGYCRHGSSCRYHHGQVAPPESFSQMNGNGGDDQGALPGSLAQLEADLIELLRPRRGSPISIASLPMLYYEKYKRVLQADGYLTESQRHGRSGYSLTKLLARLKNSIQLIDRPHGQHAVVLVENRYREKGDPSQNLSVLRQLYMTFPSESSFTEEDVSDYFNSFGQVEDVRIPPQQRRMFGFVTFVDPETVKTILEKGNPHNVCDSFVLVKPYREKSKPIYRKHSERIEPSFVCSPRYVDKDFELTPTPSYGNHRFLRRQLMDEQEQVLEFQRKQHLAELLLTQKPLSTSPHFGSSLGQFNVSDHFNFRSAEFISYALNDKTGHTDTRFADEDRGEGIDLPESPFSFPVDSGIPTVM 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0971 724 SMART rrm1_1 508 578 IPR000504 GO:0003723
Acco05g0971 724 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 514 585 - -
Acco05g0971 724 Gene3D - 515 586 IPR012677 -
Acco05g0971 724 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 361 383 IPR000571 GO:0046872
Acco05g0971 724 Coils Coil 621 641 - -
Acco05g0971 724 ProSiteProfiles Zinc finger C3H1-type profile. 357 384 IPR000571 GO:0046872
Acco05g0971 724 Pfam OST-HTH/LOTUS domain 407 485 IPR025605 -
Acco05g0971 724 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 177 716 - -
Acco05g0971 724 SUPERFAMILY RNA-binding domain, RBD 518 590 IPR035979 GO:0003676
Acco05g0971 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 566 IPR000504 GO:0003723
Acco05g0971 724 Gene3D - 355 407 - -
Acco05g0971 724 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 102 IPR025610 -
Acco05g0971 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 594 IPR000504 GO:0003723
Acco05g0971 724 ProSiteProfiles OST-type HTH domain profile. 407 490 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0971 Acco-ChrAcco05 19149683 19156360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0971 44 101 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 48.276 9.70e-11 63.2