Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0951 ATGGGTATCTCTCGTGATTCCATGCACAAAAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGGAGGCAACCAGCAAACACTAAGCTGTCAAGCAACAAAACAGTGAGGAGGATTAGGGTTCGAGGTGGGAATGTTAAGTGGCGTGCTTTGAGGCTTGATACTGGAAATTACTCATGGGGCAGTGAAGCTGTGACCCGGAAAACAAGACTTCTCGATGTGGTGTACAATGCATCTAATAATGAGCTGGTTCGTACTCAGACATTGGTCAAGAGTGCGATAGTTCAGGTAGATGCAGCACCTTTCAAGCAGTGGTATCTCCAACATTACGGTGTTGACATTGGTCGCAAGAAGAAGACTGCAACTTCTGCCAAGAAGGAAGGAGAGGAAGGTGAAGCTGCAACCGAGGAAGTGAAAAAGAGCAAACATGTTTTGAGAAAGCTCGAGAAGCGTCAGCAGAATCGAACACTGGATCCTCATATTGAAGAACAATTTGGAGGAGGTCGTCTATTGGCTTGCATCTCCTCTCGTCCTGGTCAATGTGGTCGTGCTGATGGGTATATTTTGGAGGGTAAAGAATTGGAATTCTACATGAAGAAGATTCAGAGGAAGAAGGGCAAGGGTGCTGGTGCTGCTTAA 663 0.4676 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTATSAKKEGEEGEAATEEVKKSKHVLRKLEKRQQNRTLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAGAA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0951 220 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Acco05g0951 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Acco05g0951 220 MobiDBLite consensus disorder prediction 11 26 - -
Acco05g0951 220 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Acco05g0951 220 CDD Ribosomal_S8e_like 5 197 - -
Acco05g0951 220 FunFam 40S ribosomal protein S8 32 161 - -
Acco05g0951 220 FunFam 40S ribosomal protein S8 109 176 - -
Acco05g0951 220 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Acco05g0951 220 Coils Coil 139 159 - -
Acco05g0951 220 MobiDBLite consensus disorder prediction 130 150 - -
Acco05g0951 220 Gene3D - 32 160 - -
Acco05g0951 220 Gene3D - 161 215 - -
Acco05g0951 220 MobiDBLite consensus disorder prediction 1 40 - -
Acco05g0951 220 FunFam 40S ribosomal protein S8 162 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0951 Acco-ChrAcco05 18730397 18732944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0951 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.615 7.76e-128 357