LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco05g0903	ATGGAAGCTCATTCTTCTTCCTCAACAACGTCGCTTCTTCACCAGAAACGTCTCCTCCGCGAGATGGATTTCTACTCTTCTGACAAAAAGACCAAGACTGATGATGCTGATGATCCCCATGACGATCTGATGCTAAACGGATCCACAGAGCTTAACGTTGATGCGAGTTTAGATCTTGTGACTAAGAGTAGCAGTAGCAACAGATCGACAATGGATGATGGAGCATCAGACGCCATGGAAGAGAACAAGAGAAAAGAGTATGCAGTTTCGTTAGCTGAATTGAAGCATTTGAAAGCTGAAAATCAACGTCTGAGAGATTTGCTTCATGAGGTGAACCAAAACTACAGTGCCCTCCAATTGAGACTTTTCAAGATCAAGCAGACGCAAAGTAATGAGGTACAAGAAACTGGCAGTGGAGATGATAAAAGTGAAGGCAAAGTGATAAAGAGAGAAAGCAAAAGCAATAATGTATTTGATTTGATGGAATGTAAGGTTGGGCAAAGCAGAGATAGTGATCATCATCAGCCACTAATTAACAATTATATTACTGATAACAAAGTTTATGGTGGGAAAGATATTCATAATAGTGATCAAGCCAGAGACACTTCATCAGATACCATATCACTCGTCAGGAAAGCTCGTGTCTCAGTTCGAGCACGATCTGAGTCTCCAATGATATCAGATGGATGCCAATGGAGAAAGTATGGGCAAAAGATGGCAAAGGGAAACCCTTGCCCACGAGCTTATTATCGTTGCTCTATGGGAACTTCTTGTCCTGTACGAAAACAAGTACAGAGGTGTGCCGAAGATAGAAGCATTCTGATAACTACATACGAAGGACAGCACAATCATCCACTTCCTCCAGCTGCAAAAGGTATGGCTTCCACGACATCTTCGGCTGCTTCGATGTTTCTTTCTGGATCAATTCAAAGTTCAGATCAACATCACAATAGCCTCATAAAGCCTAATATCTTAGAAAGTGCTTCAATATTTGCTTCCCCACACAGCATGGCTACTCTCACAGCCTCAGCTCCATTTCCCACTATAACCTTGGATCTCACTCGTCATCAAACTGTCCCACCGCTGTCTCCGTCTCCGCCGAAGATTTTCGGTCAGGCTCTGAGTGATCAACACTCGAGGGTTTTTCCGGGAACAATGACGTCGTCATTCACTGATACGGTTAATGCAGCAACTGCTGCCATTACTGCGGATCCCAATTTCACTGCAGCTCTCGTGGCAGCCATTACTTCTGTCATTGGAAGCTCCCATTCTAATGGTAATAATGGCTCTGATATTACTGCGAGTAGAAAACCCTAG	1317	0.4351	MEAHSSSSTTSLLHQKRLLREMDFYSSDKKTKTDDADDPHDDLMLNGSTELNVDASLDLVTKSSSSNRSTMDDGASDAMEENKRKEYAVSLAELKHLKAENQRLRDLLHEVNQNYSALQLRLFKIKQTQSNEVQETGSGDDKSEGKVIKRESKSNNVFDLMECKVGQSRDSDHHQPLINNYITDNKVYGGKDIHNSDQARDTSSDTISLVRKARVSVRARSESPMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTSCPVRKQVQRCAEDRSILITTYEGQHNHPLPPAAKGMASTTSSAASMFLSGSIQSSDQHHNSLIKPNILESASIFASPHSMATLTASAPFPTITLDLTRHQTVPPLSPSPPKIFGQALSDQHSRVFPGTMTSSFTDTVNAATAAITADPNFTAALVAAITSVIGSSHSNGNNGSDITASRKP	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco05g0903	438	FunFam	probable WRKY transcription factor 31	211	288	-	-
	Acco05g0903	438	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	55	428	IPR044810	GO:0003700
	Acco05g0903	438	Gene3D	WRKY domain	210	288	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco05g0903	438	ProSiteProfiles	WRKY domain profile.	221	287	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco05g0903	438	SUPERFAMILY	WRKY DNA-binding domain	219	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Acco05g0903	438	SMART	WRKY_cls	226	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco05g0903	438	Coils	Coil	87	121	-	-
	Acco05g0903	438	MobiDBLite	consensus disorder prediction	60	81	-	-
	Acco05g0903	438	Pfam	WRKY DNA -binding domain	228	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Acco05g0903	438	MobiDBLite	consensus disorder prediction	129	150	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco05g0903	Acco-ChrAcco05	17527287	17533701	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco05g0903	21	426	WRKY Transcription Factor Family	AT1G62300	40.580	6.70e-88	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Acco05g0903		WRKY	1.1e-23	CL0274