Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0854 ATGGAGATATCGTTATTAAACGTGCTTGTAAATGGGATAACCTCGTTTTTGCACCCAGAATTTGCCAGAAACTTGAGCTCAGAACCAATCCTAAAGTATTACCAAGAGGAAGAGGAGATACTTAAGTTCTTAAAGCCAATACTTGAAGCCATTGCTAATACTGATTTAGCTTCTGATGAAGTGTTTTTGGAGATATTTGAAGAACTGAATCAGGCTGTGTATGAACTGAGGGAGCTTTTCGAGAGTTGGCAACTATTGTGTAGCAAAATCTACATTATTTTGCAAATTGAATCCTTGATATCTAAGATTCAGATTTTGGCACTAAACATTTTCAAGCAACTAAAGGCTTCCCATCAATGTATCCCTAATGAACTAAGTCTTTCACACATAGAGCACTGTATTGAGAAGATAAATAATTTGGGACATGATGAAGAAACATCATCATCTATAATCGAGGAAGCTATCATGGAACAAAAGGAAGGCTTAGGACCAAGTTCAGAGGTCCTTGAAAAACTTGCTGCGAGCCTAGGTCTGAACTCTAATCAAGAGCTTCTAATTGAGGCTGTGACACTTGAAAAGTTGAAGGAGAATGCACAACAGATTGAAAATACTACAGAAGCTGAATATCTCAACCAGATAATTGCTCTTGTGACTTGTATGCATGAGAGACTTATAAGGCACAAGGAAGCCCAACTTCGTAGCCCAGTTTCAATACCTCCAGATTTTTGCTGCCCTCTCTCTTTGGAGTTGATGAAAGATCCTGTGATTGTGTCGTCTGGGCAAACTTACGAGCGAGCTTTCATTAAGAACTGGATCGATCTAGGGCTCACCATATGTCCAAAGACGCATCAGACTTTGGCTCATACAAACCTGATACCAAATTATACTGTGAAAGCATTGATTTCAAATTGGTGCCAATTGAACAATGTCAAGCTAGTTGATCCTATAGGGTCCTCAAATTTGGAAGGTTCTTCAAGTGACATGATTTGTAGCCAAAGTTTGGATATTTTAAGAATATCACAAACAAGTTCTAATGACATGTCTCCTAGCTTAGATGAAATGAAGGTGGATTCAGATGGCCAAGATTCTATGTCAACACCATCTAGAAGCGAATCTTCCAATGACTTCAACCAAGATTCCAATGCATTTTTGAATGAGAATTTTCCTCAAGAAACAAAAGGTAATGATTGCAATAATACTTCTCAGCCATTGGACAATTCAGGTGAAAACAAAGATGCTTCTAGGGAGGTTAATCTAAGATCAGATTTAGCTAGTCCTCGAACATTACAAGCAAGGTATCAAATCTTAAATATATGGCAGCAACCATCAAAGAATTTAAGGTTAGCATCTTCACCTGTAAGTCCTTCTGGTTTTGAAAACCTAGTTCTGAATTTGGCTAAGGACTTGAAGAGCTCTTCAATTGATACTCAGAGAGAAGCAACAGCACAACTTCGCCTTCTTTCCAAGCACAATATGGAGAATAGAATTGTTATTGCAAATTGTGGAGTCATTAGTTTACTAGTTGACCTACTTCAGTCAACTGATACAATGATCCAAGAAAATGCTGTTACAGCTCTTCTAAATTTATCAATCAATGATAATAACAAAGTTGAAATTGCAAATGCTGGTGCAATTGATTCTCTGATTCATGTTCTTGAAACAGGAAGTCCTGAAGCCAGAGAGAACTCGGCAGCCTCACTTTATAGCCTATCAATGATGGAGGAAAATAGGATTAGGATAGGGAGATCAGGGGCAATTAAGCCACTAGTTGATTTGCTAGCAAATGGAACTTTAACAGGGAAAAAGGATGCTTCTACCGCTTTGTTCAACCTGTCTATATTTCAGGAAAACAAGGGCCGGATCGTGCAAGCTGGCGCCGTGAAGCACCTCGTGGAGCTGATGAATCCAGCGTCTGGGATGGTAGAGAAGGCGGTGGCTGTTTTGGCGAATCTTGCATCAATTCCCGAAGGTAGAAGTGCAATTGGTAATGAAGGAGCTATTCGTATTCTAGTTGATGTTATTGAATTGGGTTCTGCAAGAGGCAAAGAAAATGCAGCTGCCACTCTTCTACTTATTTGTTCAAATAGTACCAGATTCTTAAACCTTATGATCCATGAAGGAGCTATCCCACCATTAGTAGCATTGTCACTATCAGGCACCCCGAGGGCCAAAGAAAAAGCACAAGCTCTACTTAACCATTGTAGAAGTCAAAGACATGGTAATGTGATAAGAAGTTGA 2238 0.3923 MEISLLNVLVNGITSFLHPEFARNLSSEPILKYYQEEEEILKFLKPILEAIANTDLASDEVFLEIFEELNQAVYELRELFESWQLLCSKIYIILQIESLISKIQILALNIFKQLKASHQCIPNELSLSHIEHCIEKINNLGHDEETSSSIIEEAIMEQKEGLGPSSEVLEKLAASLGLNSNQELLIEAVTLEKLKENAQQIENTTEAEYLNQIIALVTCMHERLIRHKEAQLRSPVSIPPDFCCPLSLELMKDPVIVSSGQTYERAFIKNWIDLGLTICPKTHQTLAHTNLIPNYTVKALISNWCQLNNVKLVDPIGSSNLEGSSSDMICSQSLDILRISQTSSNDMSPSLDEMKVDSDGQDSMSTPSRSESSNDFNQDSNAFLNENFPQETKGNDCNNTSQPLDNSGENKDASREVNLRSDLASPRTLQARYQILNIWQQPSKNLRLASSPVSPSGFENLVLNLAKDLKSSSIDTQREATAQLRLLSKHNMENRIVIANCGVISLLVDLLQSTDTMIQENAVTALLNLSINDNNKVEIANAGAIDSLIHVLETGSPEARENSAASLYSLSMMEENRIRIGRSGAIKPLVDLLANGTLTGKKDASTALFNLSIFQENKGRIVQAGAVKHLVELMNPASGMVEKAVAVLANLASIPEGRSAIGNEGAIRILVDVIELGSARGKENAAATLLLICSNSTRFLNLMIHEGAIPPLVALSLSGTPRAKEKAQALLNHCRSQRHGNVIRS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0854 745 CDD RING-Ubox_PUB 239 291 IPR045210 -
Acco05g0854 745 FunFam RING-type E3 ubiquitin transferase 449 740 - -
Acco05g0854 745 FunFam RING-type E3 ubiquitin transferase 237 312 - -
Acco05g0854 745 Pfam Armadillo/beta-catenin-like repeat 493 530 IPR000225 GO:0005515
Acco05g0854 745 Pfam Armadillo/beta-catenin-like repeat 615 653 IPR000225 GO:0005515
Acco05g0854 745 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Acco05g0854 745 SMART Ubox_2 241 304 IPR003613 GO:0004842|GO:0016567
Acco05g0854 745 PANTHER U BOX DOMAIN-CONTAINING 29 734 - -
Acco05g0854 745 Pfam U-box domain 238 307 IPR003613 GO:0004842|GO:0016567
Acco05g0854 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Acco05g0854 745 MobiDBLite consensus disorder prediction 360 408 - -
Acco05g0854 745 SUPERFAMILY ARM repeat 460 734 IPR016024 -
Acco05g0854 745 ProSiteProfiles U-box domain profile. 237 311 IPR003613 GO:0004842|GO:0016567
Acco05g0854 745 MobiDBLite consensus disorder prediction 342 423 - -
Acco05g0854 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Acco05g0854 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 585 IPR000225 GO:0005515
Acco05g0854 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 312 IPR013083 -
Acco05g0854 745 SUPERFAMILY RING/U-box 235 315 - -
Acco05g0854 745 Coils Coil 181 211 - -
Acco05g0854 745 Gene3D - 436 744 IPR011989 -
Acco05g0854 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 666 IPR000225 GO:0005515
Acco05g0854 745 SMART arm_5 614 653 IPR000225 GO:0005515
Acco05g0854 745 SMART arm_5 654 694 IPR000225 GO:0005515
Acco05g0854 745 SMART arm_5 573 613 IPR000225 GO:0005515
Acco05g0854 745 SMART arm_5 491 531 IPR000225 GO:0005515
Acco05g0854 745 SMART arm_5 532 572 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0854 Acco-ChrAcco05 15697608 15700871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0854 1 744 U-box Gene Family AT5G67340 48.591 0.0 634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1499 10 28757528 28766989 Acco05g0854 05 15697608 15700871 CCT