Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0834 ATGACGTCAGGAAACCGATGCCACTATGAAGTTCTTGGCCTAGAGCGAGATTGTACTCCTGATGAAATACGGTCAGCATATAGGCGTCTCGCCCTTCAGCGCCACCCTGACAAACTTGTCAAATCTGGCTTATCGCAAGCTGAAGCCACAGCTCAATTCCAGGAGCTGCAACATGCCTATGAAGTCCTTTCTGACCCTAAAGAGCGAGCATGGTATGATTCCCACCGGTCTCAGATTCTCTTTTCTGATCCCAACTCAGTTGGAAAGTCAGACCCCAACTCGTTCATCCCGAACCTGTTTTCCTTCTTCTCTACAAATGTTTACTCTGGATATTCAGACACTGGCAAAGGATTCTACAAGGTTTATTCTGATGCTTTTGATAAAATTCATGCTAATGAAATTAACTTTGCCAAGAAATTAGGACTAGGTATTGATGTGGTTCGACAAGCCCCAGTCATGGGCAATTTGGATAGCCCTTATACTCAAGTGACAGCATTTTACAATTACTGGCTGGGATTTTCAACAGTTATGGATTTTTGTTGGGTGGATGAGTATAATGTCATGGCTGGTCCTAACCGGAAGTCAAGGCGTCTTATGGAGGAAGAGAACAGCAAGATCAGAAAGAAGGCAAAGAAAGAGTTTAATGACACAGTGCGGAAGTTGGCTGATTTTGTCAAGAAGAGGGATAAAAGGGTGATTGATATGAAGATGAAGAAGAATATGGAGATGGAAAAGAAGGAGGAGGAGGAGAGGGAGAGGAAGAGGCAGATGGAGAAGGAGAAAAAAGAGAGGGTAATGGCATATGAAGAGCCTAAGTGGGCCCAAGTGGAGGAGGATGAAGAAGATGAGGCTGATTGGTTTGAGGAGGGGAGTAAGAAGAAGAATGCTGAGAATGAGTTTTATTGTGTACTGTGTGGTAAGAAGTTCAAGAGTGACAAGCAATGGAAGAACCATGAGCAATCGAAGAAGCATAAGGAGAAAGTTGCAGAATTTAGGGATTCACTTGATGATGAAGAGGATGTGGAGGCAGAGTTGGAAGAAATGAAGGCGGAAGAAAGAGAAGGAAAGCTGAGCTCTGAAAGTTATGAAGACAAACTTGGGGTGAGTGATGATATATATGGGAGCACTGATAATGAGATTGACAATTTAGAAGGGAGAATTAGAGATGATCTTCATGTTGCGGAGGAGGTGACTAGAAATGGGGTTGAGTTGAATGAAGAAGAGGAAGAAGAATATCTCAATGCCCAGCATCCAGAGGTGGAGGAGGCTGGCGTCTCAGTGGATTTTGATGGAGAAGAAGATGATGAATTGGGTATCCTTGAAGCGATGCTGGCTGGGCAAAGGAGCAGAAAAACTGGTGCCTCAAGGCAGGAGCACAAGGCTTCAGTGTGTACATCTCAAAATGAAATCAAGAGCGATGAGATTGGTTCTATGGAATATGACAACAGAAAGAGGTCAAAAAAGAAACGTGGAGCTAAAAAAGAGAAAGGAAGAAAAAATAGTGAAGAATTGAAGGCGACTACTAGTAACAGTAATTTTCAGAATGAAAAAAATATCAACGGTGAAGCATCTCAGGCTGAAGACTCTTCACATAATGTGGGAAACGAGAATAGTGGTACAGAAAATGAGCAGGTCCATAGAGATAAGAAGGCTTCTACTCAACGTATTGATAAAATAGGAGCTGCAAAGAATACAATAGCCAATGGAAAAAATTGCTCCAAAACAAGAAAGGCCAAGGTTGCATCAAAGAATCTCGCCAATATATGCGAGGCTTGCGGAGAGGAGTTTGAATCAAGGAATCAATTGCATAAACATCTCGGGGAAACCGGGCATGCGACCATAAAATCCACAAGGAGGCATCGCTAG 1866 0.4298 MTSGNRCHYEVLGLERDCTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGKSDPNSFIPNLFSFFSTNVYSGYSDTGKGFYKVYSDAFDKIHANEINFAKKLGLGIDVVRQAPVMGNLDSPYTQVTAFYNYWLGFSTVMDFCWVDEYNVMAGPNRKSRRLMEEENSKIRKKAKKEFNDTVRKLADFVKKRDKRVIDMKMKKNMEMEKKEEEERERKRQMEKEKKERVMAYEEPKWAQVEEDEEDEADWFEEGSKKKNAENEFYCVLCGKKFKSDKQWKNHEQSKKHKEKVAEFRDSLDDEEDVEAELEEMKAEEREGKLSSESYEDKLGVSDDIYGSTDNEIDNLEGRIRDDLHVAEEVTRNGVELNEEEEEEYLNAQHPEVEEAGVSVDFDGEEDDELGILEAMLAGQRSRKTGASRQEHKASVCTSQNEIKSDEIGSMEYDNRKRSKKKRGAKKEKGRKNSEELKATTSNSNFQNEKNINGEASQAEDSSHNVGNENSGTENEQVHRDKKASTQRIDKIGAAKNTIANGKNCSKTRKAKVASKNLANICEACGEEFESRNQLHKHLGETGHATIKSTRRHR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0834 621 MobiDBLite consensus disorder prediction 315 334 - -
Acco05g0834 621 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Acco05g0834 621 SMART c2h2final6 587 611 IPR013087 -
Acco05g0834 621 SMART c2h2final6 300 324 IPR013087 -
Acco05g0834 621 MobiDBLite consensus disorder prediction 315 378 - -
Acco05g0834 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 587 616 IPR013087 -
Acco05g0834 621 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Acco05g0834 621 Coils Coil 328 351 - -
Acco05g0834 621 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Acco05g0834 621 MobiDBLite consensus disorder prediction 458 473 - -
Acco05g0834 621 Coils Coil 233 264 - -
Acco05g0834 621 MobiDBLite consensus disorder prediction 541 556 - -
Acco05g0834 621 MobiDBLite consensus disorder prediction 448 557 - -
Acco05g0834 621 MobiDBLite consensus disorder prediction 399 436 - -
Acco05g0834 621 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Acco05g0834 621 MobiDBLite consensus disorder prediction 504 540 - -
Acco05g0834 621 ProSitePatterns Zinc finger C2H2 type domain signature. 589 611 IPR013087 -
Acco05g0834 621 PRINTS DnaJ domain signature 27 42 IPR001623 -
Acco05g0834 621 PRINTS DnaJ domain signature 48 68 IPR001623 -
Acco05g0834 621 PRINTS DnaJ domain signature 9 27 IPR001623 -
Acco05g0834 621 SMART dnaj_3 6 68 IPR001623 -
Acco05g0834 621 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Acco05g0834 621 MobiDBLite consensus disorder prediction 348 367 - -
Acco05g0834 621 Gene3D Classic Zinc Finger 288 350 - -
Acco05g0834 621 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Acco05g0834 621 SUPERFAMILY Chaperone J-domain 4 98 IPR036869 -
Acco05g0834 621 CDD DnaJ 7 65 IPR001623 -
Acco05g0834 621 Pfam DnaJ domain 8 73 IPR001623 -
Acco05g0834 621 SUPERFAMILY beta-beta-alpha zinc fingers 294 341 IPR036236 -
Acco05g0834 621 Gene3D DnaJ domain 1 88 IPR036869 -
Acco05g0834 621 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 616 IPR044648 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0834 Acco-ChrAcco05 14899944 14902586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0834 6 616 C2H2 Transcription Factor Family AT1G74250 49.080 1.20e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g0834 DnaJ 5.9e-22 CL0392