Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0833 ATGGAGTCCGACATTTGCGGGAATACTCCGTGCGGAGCGGTCACTACACACGAATGGAAGAAGGGGTGGCTGCTACGATCCGGTGGATTTGCTAAACTCTGTGATAAGTGCGGATCTGCCTATGAAAATTCTTTTTTCTGTAAAAAGTTCCACCTTGAAGAATCTGGTTGGAGGGAGTGCAACTTCTGCAAAAAGGCTATTCACTGCGGATGCATAGTGTCTAAATCTTTGTTCGAGTACCTAGATTTTGGTGGTATAGGCTGTATTAGCTGTGTCAAGTCTGCCCAACTTCATTTGATGCAAAATAGTATTACATCTGCCAAAAACGTTGCAAGTGAACAGCCTTCTTCACATATTGATGGCAGAATCTCTGTGGATAGTGTTCATGAAGGCAAACTTATGCAATTGTGCAAAATTGTTGAAGCTGGTGAATCTAGCCACTGGTCTCAAGTTCAGAGAGATGGGATACTTCTATCTAGTGGGCAGAACAGCCAGGAAGTTAAGTGTCCAATCAGGGAAGTGGATACAGGATTTTCAAATGTGATGCATCCATCTGTTCAGTCATTAACATTTGCCAAATTAGAAAATAGCAGAGCAGCTTGGGAGCTAAAAAATATGCATGAATTGCCTGTGCAGCCATCATTTTGTATGTCTCTGGGAACTTCATCAGGAAACCCTGTCATGCCTTCTTCTGGAGAGATTGTAGAAGGAAGAGTTGAGGAAAAACCATTTCCTTTTCATCAAGGGCAAAGATCTCGGCCTTTGTTGCCCAAACCACCAAAGACTGGATTAACCATAAATCAAGAAACAAATAAAGGTGTTCTTTCTCATCCGCGAATAGCCCGACCACCTGCTGAGGCAAGGGGCAAGAATCAGTTGCTTCCTCGATACTGGCCCCGGCTTACTGATAAAGAGCTGGAGCAATGGTCTGGAGATTTGAAGTCCACTGTAGTGCCACTATTTGAGAAGGTGTTGAGTGCCAGTGATGCCGGTCGAATTGGTCGTCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTATTTTCCTCCCATTTCTCAATCAGAAGGTCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTTCGATTTTGGCCCAATAATAACAGTAGGATGTATGTTTTGGAGGGTGTGACTCCTTGCATACAGTCCATGCAGTTACGTGCTGGTGATACTGTAATATTTAGTCGGATAGATCCTGGAGGCAAACTTGTTATCGGTTTCAGGAAGGCGTCTAACTCTGTAGACACACAGGATGCCTCTACATCTGCACCTTCAAATGGCATTTCAATGACAGATACTTCTTGTTCTGGGGTCACTGATCATCTTCACCCTGGAAACAGTTATCCTGTTTCTCCCCAGTTGGTGAAGGTGAAGAGGGAAGCTTACTCAAACGGACTTTCAGAACATCTGCATTTGAATAGTATGGATGCTGGTTTGCCTAAATCTGAAAATTGTGGGAGCATGACAAACAATGATTCCCTGCAGCAGCCAATCTCAGTTTCAGAGAAGAAAAGGACTCGAAATATTGGGTCTAAAAGTAAGAGGTTGCTCATTCGTAGTGAAGATTCCATGGAGTTGAGACTGACTTGGGAAGAAGCTCAGGACTTACTTCGTCCACCACCTAGTGTCAAGCCAAGCATTGTTACGATAGAGGACCATGTGTTTGAAGAGTATGATGAACCACCTGTTTTTGGAAAGAGGGCCTTTTTCACTACACATTCATCTGGGAGACAAGATCAATGGGCTCAATGCGATAATTGCTGTAAATGGCGAAGGCTACCGGTTGATGTTCTACTTCCTCCTAAGTGGACATGCTCAGAAAATGAGTGGGATGATAGCAGGTCTCTGTGTTCTGCGCCAGAGGAGCTCATTCCAAAGGAGTTGGAAAATCTTCTGAGAACAAGCAAAGGTTTTAAGAAGAAAAGAATTGCAGAAGTCAGGAAGTTACCCCAAGAGCATGAAACTTCCGGCTTAGATGCCCTCGCCAGTCTGGCAGTCCTAGGAGAAAATTTTCTTGCCCCTGCTGAGTCATCTGCAGGAGTCACCACCAAACATCCTCGACACCGTCCAGGATGCACCTGCATAGTGTGCATCCAGCCACCAAGTGGGAAGGGGAGACATAAGCCCACATGTACTTGCAATGTGTGCATGACCGTGAAACGCCGATTCAAAACCCTTATGATGCGTAAAAAGAAACGCCAATCAGAACGCGAAGATGCCACTGAGAAGGAAACAGCCCACTACCAGAGGGATGAATCTGAAACGAATGGTGCTTCAAGAGACAATGCAGTTTGTATAGAAGAAAACGGGGAAGGCTTGGCCAGAGGTCATCCTGAGGTCAGTGACCCCAGTACTGGACAAATAGATCTGAATTGTCATCCCAAACGTGAAGACATGCTTGTTTATGAAACAGAACTGAGCATGACTAGTCATCTTGAAACAACTAACTATCTACGATAA 2493 0.4469 MESDICGNTPCGAVTTHEWKKGWLLRSGGFAKLCDKCGSAYENSFFCKKFHLEESGWRECNFCKKAIHCGCIVSKSLFEYLDFGGIGCISCVKSAQLHLMQNSITSAKNVASEQPSSHIDGRISVDSVHEGKLMQLCKIVEAGESSHWSQVQRDGILLSSGQNSQEVKCPIREVDTGFSNVMHPSVQSLTFAKLENSRAAWELKNMHELPVQPSFCMSLGTSSGNPVMPSSGEIVEGRVEEKPFPFHQGQRSRPLLPKPPKTGLTINQETNKGVLSHPRIARPPAEARGKNQLLPRYWPRLTDKELEQWSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRIDPGGKLVIGFRKASNSVDTQDASTSAPSNGISMTDTSCSGVTDHLHPGNSYPVSPQLVKVKREAYSNGLSEHLHLNSMDAGLPKSENCGSMTNNDSLQQPISVSEKKRTRNIGSKSKRLLIRSEDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDHVFEEYDEPPVFGKRAFFTTHSSGRQDQWAQCDNCCKWRRLPVDVLLPPKWTCSENEWDDSRSLCSAPEELIPKELENLLRTSKGFKKKRIAEVRKLPQEHETSGLDALASLAVLGENFLAPAESSAGVTTKHPRHRPGCTCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREDATEKETAHYQRDESETNGASRDNAVCIEENGEGLARGHPEVSDPSTGQIDLNCHPKREDMLVYETELSMTSHLETTNYLR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0833 830 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Acco05g0833 830 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 825 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 738 774 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 245 266 - -
Acco05g0833 830 CDD B3_DNA 319 420 IPR003340 GO:0003677
Acco05g0833 830 Gene3D - 299 426 IPR015300 -
Acco05g0833 830 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Acco05g0833 830 MobiDBLite consensus disorder prediction 425 452 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 742 768 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 488 517 - -
Acco05g0833 830 SMART B3_2 321 422 IPR003340 GO:0003677
Acco05g0833 830 Gene3D - 589 644 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 783 802 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 425 461 - -
Acco05g0833 830 MobiDBLite consensus disorder prediction 494 515 - -
Acco05g0833 830 SUPERFAMILY DNA-binding pseudobarrel domain 318 421 IPR015300 -
Acco05g0833 830 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Acco05g0833 830 Pfam B3 DNA binding domain 321 421 IPR003340 GO:0003677
Acco05g0833 830 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0833 Acco-ChrAcco05 14886109 14896055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0833 1 816 B3 DNA Binding Superfamily AT2G30470 50.244 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco05g0833 B3 5e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1472 10 28488059 28494825 Acco05g0833 05 14886109 14896055 CCT
Acco05g0833 05 14886109 14896055 Acco05g0833 05 14886109 14896055 ECH