Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0823 ATGTCCGTACAATCGCCTGTGAAGAACACTGCATCTGATCCCATATTATGCAAAACAAGTCGAAGAACAAGAGCAAGAACAAGAAGCCATCAAAAGGTCCTCAGAATCATCTTCTCCGACCACGATGCTACAGATTCCGACACTTCCAGCGATGAAGATGATGATGCAGAGAAACCTCGGAGACTAGGAAGAGTTAAGAAGCATATCACAGAGATCACTATGAATCTTCCCTCTTCTCATCAATCAACTACATCTTTTTCTCTGGCTTGTTTCAAGAAACACGACCATACAATCTTGAAGAGACCTAAGAAATCTCCGTCTCGATGCTGTCATAACAAATTCAGGGGTGTTCACCGGAGGCCGTGGGGGCGGTGGGCTGCTGAGATCCGAGACCCGATCCGACGGAAACGACTGTGGCTGGGAACCTTTGACACGGCGGAAGAAGCAGCCAGCGAGTACGACAAGGCTGCAATCAAGCTCAAGGGTGATAACGCCGTCACGAACTTCCCTAACTCCGTTGCGACGGAGAGAGAAACAAGGCTGGTAACAGTAGTGGACACCCAACCGAGCACCACCGGGGGATTCGCCCCCTCGATGGCGTCTCCGACTTCAGTGCTTGCCTATGACAGAGATTATTCTACGGCGGCGGTGTTCGGAGGTTTCTGCTTCGGCGAGGTGGATGCGTTGGGTTTCGATATTGAGATGCCGATGACGGAGATGAACGTGGTGGTGGGATTTGATCACAAGAAATCGGAGAGTGAAGAATTCGAAGACTTTGACGTGGACGAGTTCTTGACGTGGCCAGACTAA 810 0.5037 MSVQSPVKNTASDPILCKTSRRTRARTRSHQKVLRIIFSDHDATDSDTSSDEDDDAEKPRRLGRVKKHITEITMNLPSSHQSTTSFSLACFKKHDHTILKRPKKSPSRCCHNKFRGVHRRPWGRWAAEIRDPIRRKRLWLGTFDTAEEAASEYDKAAIKLKGDNAVTNFPNSVATERETRLVTVVDTQPSTTGGFAPSMASPTSVLAYDRDYSTAAVFGGFCFGEVDALGFDIEMPMTEMNVVVGFDHKKSESEEFEDFDVDEFLTWPD 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0823 269 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Acco05g0823 269 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Acco05g0823 269 MobiDBLite consensus disorder prediction 1 17 - -
Acco05g0823 269 PIRSF PTI6 1 269 IPR017392 GO:0003700
Acco05g0823 269 MobiDBLite consensus disorder prediction 42 64 - -
Acco05g0823 269 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Acco05g0823 269 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Acco05g0823 269 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Acco05g0823 269 SUPERFAMILY DNA-binding domain 113 172 IPR016177 GO:0003677
Acco05g0823 269 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 207 - -
Acco05g0823 269 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Acco05g0823 269 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Acco05g0823 269 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Acco05g0823 269 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0823 Acco-ChrAcco05 14536137 14536946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0823 6 208 AP2-EREBP Transcription Factor Family AT4G27950 41.038 1.60e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco05g0823 AP2 2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g1465 10 28409781 28412889 Acco05g0823 05 14536137 14536946 CCT
Acco05g0823 05 14536137 14536946 Acco05g0823 05 14536137 14536946 ECH