Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0762 ATGGATTGCGTCCTCCTGGTTCTTTTATTTTATGCTTTATTGTGCATTCTTGAGCTATGTATTTGTGTTCAAAATGATTTTTCTGTTTTAAGATCATGGCCACCTGACTTTGACCAATTTGTGACCTTTGAGGGATTGGTTTTGCATGAAAAGTCTGTCTTGTCTAGGATTTGTGTTAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTACGGGACTTGTTTTCACAGAAAGGAGAAATAACAGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATTGGTTTTCATACAGTGGATGAAGCCAATGAAGCTATAAAATATTTCAATAGATCCTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAGATATTCCTCGTCCATGGAGTCGACATTCATTGAAGAAAGGGGAGAAAGTGATCCAAGGTGGGGAGAAAAATGCTGAAAATAGAAGTAGTGCTAAGGCACAAAGAGGTGGAGAGAATTTGAAGGTGAGCGCTGACATTGATGATCCACATCTTCAAGAATTCCTTCAGGTTATGCAGCCTCGGGCCAAGTCAAAATTGTGGGCAAATGATACACTATCAGTGTTGGATAAAGTTAGTGAGAAGCAAAAGTTAGCTGAGAATAAAAGCAAGGATCTTTCAGTTCCAAAGCATGATGAGTTACCTCAAAGTGGCTCATTGGACGATGGGTCCTCAGATGGCTCATTAGATGATGGGTCCTCAGATGGCTCATTAGATGATGGGTCCTCAGATGGCTCATTAGAAGATGGATCCTCAGATAGTCATGAATCTGAGAAGCCAAATAATATTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGGAGTGGTCTGATTTTGAAAATAGTGATGATGATGAAGAAAACAATACCTCTGTGAGCGATGATGACGAGAACAAAGAAGGCAATGATAGTCATACTGATGAAGATGAAGAAAATTGTGATGATAAATCTTTGACAGGAACTGGAAGTGGTGATGCTCAAAATTTAGACCTGTCAGGCCAAGAAGATTTCTGTAGTGATGATACTGACCATGGAAGGATTGAAGTGAGACGCCCTTCTAGTCTTTCTGGTGATGAAGTACCTGAGCAAGGGGTTCCTTCATCATGTCTGGAAAATGAGAAAGGAGTTATTGAGTCTTGTCGACTTTTTGTCCGCAATCTGCCATATACAGCCACTGAGGAGGAACTTGAAGAACACTTCAGCAAGTTTGGCACTGTCTCACAGGTTCATCTAGTTGTTGATAAATATACAAAAAGGTCCAAAGGAATAGCTTATATTCTTTACACACTTCCAGAACTTGCAGCCAGGGCACTAGAAGAGTTAGACAATTCAATCTTCCAAGGAAGATTACTGCATGTTTTGCCAGCTGTGCAAAGACCTTCAGACATCAAGGAAAAGAATACATCAATGGACCAAAGCTCCAGAACATTTAAGAAAAAGAGAGAGGAGGAGCGGAAAGCAGTTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCTCTGACACTGTTGTTGAAAATATTGCTCGTAAATATGGTGTAAGTAAAAGTGATTTGCTTGACCGAGAAGCTGATGACCTTGCTGTGCGCATTGCTTTGGGAGAAACCCAAGTGATTGCAGAGACAAAAAAGGCCCTTGAAAATGCTGGCGTGAATGTGGTGTCTTTGGAGGAATTTGCCAATGGCCAAAAAGTTGGTGTGAAAAGGAGCAACCATGTACTTTTAGTGAAGAACTTGCCATATGGCTCCTCAGAAAAGGAATTAGCAAAGATGTTTGGAAAATTTGGGAGTTTGGACAAAATAATTCTGCCTCCAACAAAGACATTGGCCTTGGTTGTCTACCTTGAACCAGCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCGTACAAACGTTTTAAAGATGCACCATTGTATTTGGAATGGGCTCCATCCAATGTACTTAGCCAAAGTTTAACATCTGGAAGCAATGAAAAGAGTGGTGCAATTGGTGAAAATGAGGTCAAACGGATGAAACTGGAACAACATCTTACAGGAGTATCAGATGGGGACATCGATCAGGACAGAGTTGAGGCCCGCTCTCTATTTGTCAAGAACATCAACTTTAGGACATCAGATGAGAGTTTGAGGAATCATTTTAGTGAACACATTAAAGAGGGAAGAGTTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGAAAACAAGTTTCTATGGGATTTGGATTTATCGAATTTGATTCTGTGGAGACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATTTTACAAATCTGTCATGCCAAGGACAGACAAGTACCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAGAAATGTAGCTTTCGAGGCCACAGAGAAAGAATTGAGACAGTTGTTCAGCCCATTCGGCCAGATTAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGTTTTGCTTTTGTGGAATATGTTACACAGCAAGAGGCCCAAAATGCACTTAATGCTCTTTCAAGCACCCACTTGTACGGCAGGCATCTGGTGTTGGAGAGAGCAAAGGAAGGTGAGAGTTTGGAGGAACTACGGGCTCGAACGGCCGCACAATTTAGTGATGGGCTAAATGGATTTCAAAAGTTATCCAAGAAGAGGAAGCTCTTGTCAATTTCGGACGGAGGGAAGATGGAGTTTGAAAGAATTGCTGATTAG 2841 0.4108 MDCVLLVLLFYALLCILELCICVQNDFSVLRSWPPDFDQFVTFEGLVLHEKSVLSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFHTVDEANEAIKYFNRSYLDTCRITCEVARKVGDPDIPRPWSRHSLKKGEKVIQGGEKNAENRSSAKAQRGGENLKVSADIDDPHLQEFLQVMQPRAKSKLWANDTLSVLDKVSEKQKLAENKSKDLSVPKHDELPQSGSLDDGSSDGSLDDGSSDGSLDDGSSDGSLEDGSSDSHESEKPNNIVHDDAISDMEYFKSRVTKEWSDFENSDDDEENNTSVSDDDENKEGNDSHTDEDEENCDDKSLTGTGSGDAQNLDLSGQEDFCSDDTDHGRIEVRRPSSLSGDEVPEQGVPSSCLENEKGVIESCRLFVRNLPYTATEEELEEHFSKFGTVSQVHLVVDKYTKRSKGIAYILYTLPELAARALEELDNSIFQGRLLHVLPAVQRPSDIKEKNTSMDQSSRTFKKKREEERKAVEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALENAGVNVVSLEEFANGQKVGVKRSNHVLLVKNLPYGSSEKELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSLTSGSNEKSGAIGENEVKRMKLEQHLTGVSDGDIDQDRVEARSLFVKNINFRTSDESLRNHFSEHIKEGRVLSAKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQICHAKDRQVPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALNALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDGLNGFQKLSKKRKLLSISDGGKMEFERIAD 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0762 946 CDD RRM5_RBM19_like 725 805 IPR034423 -
Acco05g0762 946 CDD RRM6_RBM19_RRM5_MRD1 823 897 - -
Acco05g0762 946 MobiDBLite consensus disorder prediction 138 174 - -
Acco05g0762 946 FunFam Nucleotide/nucleic acid binding protein 720 814 - -
Acco05g0762 946 MobiDBLite consensus disorder prediction 240 270 - -
Acco05g0762 946 SUPERFAMILY RNA-binding domain, RBD 601 688 IPR035979 GO:0003676
Acco05g0762 946 MobiDBLite consensus disorder prediction 366 384 - -
Acco05g0762 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 604 676 IPR000504 GO:0003723
Acco05g0762 946 CDD RRM4_RBM19_RRM3_MRD1 604 675 - -
Acco05g0762 946 FunFam Multiple RNA-binding domain-containing protein 1 595 697 - -
Acco05g0762 946 MobiDBLite consensus disorder prediction 220 292 - -
Acco05g0762 946 FunFam Multiple RNA-binding domain-containing protein 1 817 923 - -
Acco05g0762 946 MobiDBLite consensus disorder prediction 306 397 - -
Acco05g0762 946 SUPERFAMILY RNA-binding domain, RBD 711 810 IPR035979 GO:0003676
Acco05g0762 946 MobiDBLite consensus disorder prediction 138 158 - -
Acco05g0762 946 Gene3D - 49 179 IPR012677 -
Acco05g0762 946 CDD RRM3_RBM19_RRM2_MRD1 410 483 - -
Acco05g0762 946 MobiDBLite consensus disorder prediction 271 292 - -
Acco05g0762 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 823 899 IPR000504 GO:0003723
Acco05g0762 946 SMART rrm2_1 56 128 IPR003954 GO:0003676
Acco05g0762 946 SMART rrm2_1 725 803 IPR003954 GO:0003676
Acco05g0762 946 SMART rrm2_1 410 483 IPR003954 GO:0003676
Acco05g0762 946 FunFam RNA-binding motif protein 19 52 153 - -
Acco05g0762 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 726 800 IPR000504 GO:0003723
Acco05g0762 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 125 IPR000504 GO:0003723
Acco05g0762 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 606 668 IPR000504 GO:0003723
Acco05g0762 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 825 892 IPR000504 GO:0003723
Acco05g0762 946 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 411 481 IPR000504 GO:0003723
Acco05g0762 946 SUPERFAMILY RNA-binding domain, RBD 818 902 IPR035979 GO:0003676
Acco05g0762 946 CDD RRM1_MRD1 55 130 - -
Acco05g0762 946 Gene3D - 596 700 IPR012677 -
Acco05g0762 946 Gene3D - 815 917 IPR012677 -
Acco05g0762 946 MobiDBLite consensus disorder prediction 346 364 - -
Acco05g0762 946 MobiDBLite consensus disorder prediction 308 322 - -
Acco05g0762 946 SMART rrm1_1 410 483 IPR000504 GO:0003723
Acco05g0762 946 SMART rrm1_1 56 128 IPR000504 GO:0003723
Acco05g0762 946 SMART rrm1_1 824 895 IPR000504 GO:0003723
Acco05g0762 946 SMART rrm1_1 605 672 IPR000504 GO:0003723
Acco05g0762 946 SMART rrm1_1 725 803 IPR000504 GO:0003723
Acco05g0762 946 Gene3D - 721 814 IPR012677 -
Acco05g0762 946 MobiDBLite consensus disorder prediction 491 512 - -
Acco05g0762 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 132 IPR000504 GO:0003723
Acco05g0762 946 Gene3D - 298 498 IPR012677 -
Acco05g0762 946 SUPERFAMILY RNA-binding domain, RBD 403 500 IPR035979 GO:0003676
Acco05g0762 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 724 807 IPR000504 GO:0003723
Acco05g0762 946 MobiDBLite consensus disorder prediction 220 239 - -
Acco05g0762 946 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 409 487 IPR000504 GO:0003723
Acco05g0762 946 MobiDBLite consensus disorder prediction 493 512 - -
Acco05g0762 946 SUPERFAMILY RNA-binding domain, RBD 56 142 IPR035979 GO:0003676
Acco05g0762 946 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 335 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0762 Acco-ChrAcco05 12476554 12491594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0762 715 915 Eukaryotic Initiation Factors Gene Family AT1G49760 28.169 9.33e-12 67.0