Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0750 ATGACGTCGGCAAATCTCTCTTCGCCGGTGGCTTCTGCCGTACAATCCATCCGCCGTTCATTGACTGATCTCTGCGACCGCGAACACCATTACTTATTCGAAAACCCCCAACGGTTCTCGGGCTTGGCCCGGCGACTTCAGCTTCTCGTCAACCAGCTTCTCCTGTCGTTGCAATCACCGTCGCCGGAGACCTTGCCGACGTTGGTGCAGACCGCCCTGAAAGGAATGACCGGCGATCTTTCGAAGGCTGCAGAAGTTGTTTCCGTTTATGAGAAAAGTAGCAAGATATTTGTCTTGATCAACTGCAAGTCACTCTGCTTATGCCTTGAGGAGCACACTTCCTCCATAGGAGGATGGCTCGCCTTGCTCGATGAGGCTCTTCAAGACGACCCTGAGCTCCAAAAGAAAGCATCTGATCTCTCCAGAGACATGAAGCTCGCTAAGTTCAGAGTTACAGAGTACGAAGAGAGAGTTCAAAATACGCTGGAAAAAGAAGGCTTAGGAAGACCAACCACCAAGGCGGTGCAGAGTGCTATTGTGATGGATTTGGCTCGCGCTCTGGGGATTGACCCAGGTGATCATACAGAATTATCAAACGAAATAAAGCTGTTCAAGAATGACCTATTGCGCTCAAGTTCTGTATCCGAACGGCGGATTTTAGGTTCCCTCGAAAGGATTTTGAATAATTGGTCCGTTGAACCTTGCATTGAGACTCGAAAATTGAACTTCGACCTTGAAGACAATACAGCAATTTCTCCCTTCAAAAATTTTCTTTGCCCATTGACAAAGGAAGTGATGAAGAATCCTGTGGTTCTGGAAAGTTCCCAGACCTATGAACGGACTGCTATAGAATACTGGATTGAGAGGTGTATTCAAGATGCTCGTGACCCAACTTGTCCTGTAACTGGGAAGGTTCTTAAATCCTTGGAACTGAAGCCCAATATTGGATTGGCTGGGGCAATAGATGAGTGGGTTAACAGGGTTGTCGAGCATAAAGTCAAATCTGCTGCTGAACACTTGACTGAGGAGCCACTTTGTATAGATCACGTTGAGCAAGCTTTGGATAACATTAATAGGGTTTCAGAAGACCATCCTCCTAGCAGATATGTAATCAAGAATGCTGGAATTATACAAATGATAGTGAAGCTTCTTACTAATAGCTCAAAAGTTATTGGATCACGGTTGAGAAGTAAAGCCTTTATGACTTTAGTTAGTATGGCTAAAGATGAAGAAAGCAAGAAAATAATGCTTGAAGGGAGAATCACAAGATTGGCTGTACACAGTCTTACTGGTAGCTCAGAGAAAGAGAGGGAGTATGCTGTGAAGTTATTGCTGGAGTTCTGCGGCGATGAAGCTTATTGCATAGGAGTTGCATCAGAGAAAGGTGCATTGGTTCTCCTCACAAGTATGGCAGGAAATCTAGAGTTTCCTGCTTCGTCCAAGTTAGCTGAGGAAGTCTTAAGGCAGTTGGAGAAGGTGGAGGATAATGTGCAACGTTTAGCGGCATCTGGAAGATTTGAACCTTTACTTTCTCGGCTGCATGGTGGTCCGGATGCTGTAAAGATAGAGATGGCCTCTCTGCTCGGAAGGATGACCTTGACAAACAACAATAAAGAGCAAATTGCTAGGCAAAGTGCTGGAGTACTTGTTGACCTGTTGTCGAAGCCAGAAGGAAGAGAACCGGGTCTGCAAGCATTATATAACTTGTCAGGACTGGATGACAACGCTACCATCCTTGTTGAGTCTCCAGTCTTTCCATCTCTTGTTAATGTTCTTTTTGATGACAAGGAGCTCTCAAATGAAATTAAAACATTAGCCGCTTCAACAATTGCAAATATCATATCAAAGCCAGGACGTTGGGAATTAGCATCTATCGACATGAAGGGGAGTTCAATGCAGTCAGAAAATATAGTTTTCAGACTTTTACAACTGTTAAACTCAGTGTCATCTCAGTGTCAAGTACAAGTTCTTCGCATTCTCTATGGACTAACATCATCCCCACAGGCATCAAAGTCAGTAGCTTTGCACATAAAATCTGGGGATGGCTTTAAAACGGTCACACAATTTCTTGAAAGCCCAGAAGTTGAACTCAGAATATATGCTTTGAAGCTTTTGAGACTACTATCTGAACTGTTCAGTCAAGATCTGGGAAATGAGCTGAGACTTTCCAACAAGCTCACCATCCTCAAAGAAAAAATGCTGGATGATCAATCTGCGGAGGAAGAGAGAGCAATTGCGGCATGCATATTTGCCAACCTTTCCTTAACAGAGAATGAAGTAAAATTACTTTTGGGAGGTGATTTCATTAAATGGATCGTCGCCTCCCTCAAGAACCAGAGACGCAGCTCCAATGCAAGGATCTCACAGACAGCGGCAAGCTTTTCGGAAGGTCTTCTCGGTCTCTTGCTTCACTTCACTAGGAGCCTTGACGAGCAAACCCTTACCATCATCAGAGAAAATCGTCTCATGACCATTTTCTGTGAACAGCTGGAATATGCTTCCAAACCAAAGGTAAAAAGACTTGCTGCCCTTGGATTAAAAAGCTTGTCAGAAATTGGAAGGACAGTTATTTCTAGGGACACTGGACCCTCACCTTCTGGATTCTTCTCTTCCTTCTTGTTCATCTGTGGGAGGACCTCTAATCAGAACCTTTTGTGTCCGATTCACGACAGCCCCTGTGAGGAAGATAGTCAATTGTGCCTGCTAAAGAACAACTGTATAAAGCCTCTAAATGATCTCCTCAGTGATACCAATGAAACAGGTGTTCAAATTGCTGCAGTGGAGGCACTTTCAACACTATTACTGGATTATTCATCAAATGGTTTCAAGAGAGCAGCTGATGAGCTTGAGCAATTGGGTGTGGTTGATTCTGTGATCAATCTTTTCACAGAGGCAAGATCTGGGGAGCTTCAAGAGAAGACTGTTTGGATCATAGAGAAAATATTGAGAGTGGAAAATCACATACCTAAGTACTCACTTAATCAGTCTCTTGTGAGGGGCTTGGTTGAAGCCTTTAAGCATGGCAATCCCAACACCAAGATGCTTGCTCAACGTGCTTTAACTTGCCTAAAGCAAATATCTTTTCTAAGCGAGAAGGCATCAAGCCAACCTCGAGCTACGAGGTAG 3126 0.4411 MTSANLSSPVASAVQSIRRSLTDLCDREHHYLFENPQRFSGLARRLQLLVNQLLLSLQSPSPETLPTLVQTALKGMTGDLSKAAEVVSVYEKSSKIFVLINCKSLCLCLEEHTSSIGGWLALLDEALQDDPELQKKASDLSRDMKLAKFRVTEYEERVQNTLEKEGLGRPTTKAVQSAIVMDLARALGIDPGDHTELSNEIKLFKNDLLRSSSVSERRILGSLERILNNWSVEPCIETRKLNFDLEDNTAISPFKNFLCPLTKEVMKNPVVLESSQTYERTAIEYWIERCIQDARDPTCPVTGKVLKSLELKPNIGLAGAIDEWVNRVVEHKVKSAAEHLTEEPLCIDHVEQALDNINRVSEDHPPSRYVIKNAGIIQMIVKLLTNSSKVIGSRLRSKAFMTLVSMAKDEESKKIMLEGRITRLAVHSLTGSSEKEREYAVKLLLEFCGDEAYCIGVASEKGALVLLTSMAGNLEFPASSKLAEEVLRQLEKVEDNVQRLAASGRFEPLLSRLHGGPDAVKIEMASLLGRMTLTNNNKEQIARQSAGVLVDLLSKPEGREPGLQALYNLSGLDDNATILVESPVFPSLVNVLFDDKELSNEIKTLAASTIANIISKPGRWELASIDMKGSSMQSENIVFRLLQLLNSVSSQCQVQVLRILYGLTSSPQASKSVALHIKSGDGFKTVTQFLESPEVELRIYALKLLRLLSELFSQDLGNELRLSNKLTILKEKMLDDQSAEEERAIAACIFANLSLTENEVKLLLGGDFIKWIVASLKNQRRSSNARISQTAASFSEGLLGLLLHFTRSLDEQTLTIIRENRLMTIFCEQLEYASKPKVKRLAALGLKSLSEIGRTVISRDTGPSPSGFFSSFLFICGRTSNQNLLCPIHDSPCEEDSQLCLLKNNCIKPLNDLLSDTNETGVQIAAVEALSTLLLDYSSNGFKRAADELEQLGVVDSVINLFTEARSGELQEKTVWIIEKILRVENHIPKYSLNQSLVRGLVEAFKHGNPNTKMLAQRALTCLKQISFLSEKASSQPRATR 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0750 1041 Coils Coil 483 503 - -
Acco05g0750 1041 Gene3D - 874 1038 IPR011989 -
Acco05g0750 1041 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Acco05g0750 1041 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 1030 - -
Acco05g0750 1041 ProSiteProfiles U-box domain profile. 252 331 IPR003613 GO:0004842|GO:0016567
Acco05g0750 1041 SUPERFAMILY RING/U-box 249 327 - -
Acco05g0750 1041 SUPERFAMILY ARM repeat 681 1024 IPR016024 -
Acco05g0750 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 339 IPR013083 -
Acco05g0750 1041 SUPERFAMILY ARM repeat 347 781 IPR016024 -
Acco05g0750 1041 CDD RING-Ubox_PUB 257 311 IPR045210 -
Acco05g0750 1041 SMART Ubox_2 256 324 IPR003613 GO:0004842|GO:0016567
Acco05g0750 1041 Gene3D - 340 853 IPR011989 -
Acco05g0750 1041 SMART arm_5 809 851 IPR000225 GO:0005515
Acco05g0750 1041 SMART arm_5 534 571 IPR000225 GO:0005515
Acco05g0750 1041 SMART arm_5 893 935 IPR000225 GO:0005515
Acco05g0750 1041 SMART arm_5 942 983 IPR000225 GO:0005515
Acco05g0750 1041 SMART arm_5 572 615 IPR000225 GO:0005515
Acco05g0750 1041 SMART arm_5 364 408 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0750 Acco-ChrAcco05 12136653 12141480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0750 254 1030 U-box Gene Family AT1G20780 30.189 8.63e-92 309