Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0703 ATGAATCCTTTAACCCTAGTGAAGCGCATTCAGAATATCAATTCCAAAGAAGCTTCTCTGGGCATCAGCGACGAGGCTTCCTGGCACGCCAAGTACAAAGATTCCGCTTATGTATTCGTCGGCGGCATTCCCTTCGATCTAACCGAGGGTGATCTTCTAGCAGTTTTTTCTCAATACGGGGAAGTTGTTGATGTAAATCTTGTTAGGGACAAAGGTACTGGGAAATCGAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGAAGCACAAATCTGGCTGTAGATAATTTGAATGGAGCACAGATTTTGGGTCGAGTCATTCGAGTTGATCACGTCACTAAATACAAAAAGAAAGAAGAGGAAGATGAAGAGACAGAGAGGAAGAAAAGGGAGGAACGAGGTGTTTGCCGAGCTTTCCAGAGAGGTGAATGCACACGTGGAGCTAGCTGCAAATTTTCTCATGATGCGCAAAGAGCTGCAAACACAGGTTGGGGGGCCCCTGAGGATGCTAGTTCAAAGTGGGGTCATGAGAAATTTGACGGTCACAAAAGAGAAAGAGATATACACTCTGAAGCTAAAAAATCAAGGAGAGGTGATGATGATATGGAACTCGAGCGAAGAGATCGTTATAGGAGGGAAGACACTAGGTCAAGGAAGCCAGATAATGATGAGTTTGAACCCAGGACGAGAGATTCTGATAGAAGGGAAGAAAAGAGGCACAAGAGACAGTATGATGATGATGATTTTGGTAGTAGACCAAGGGAAGATCATATTAGCCGGGAAGAGAGGGGGTCGAGGCAAAGAGACTATGATTCTGCATCAAGGTCAACAGATGATTATGATAGGAAGCCAGGTGACAGATCAAACAGACATGATACAGATAGATCTGAGCCAAAACAAAAATATGATTTGGGCAGGAGAGAGGAAAACAGATCAAGAAGGTGA 945 0.437 MNPLTLVKRIQNINSKEASLGISDEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFSQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRVIRVDHVTKYKKKEEEDEETERKKREERGVCRAFQRGECTRGASCKFSHDAQRAANTGWGAPEDASSKWGHEKFDGHKRERDIHSEAKKSRRGDDDMELERRDRYRREDTRSRKPDNDEFEPRTRDSDRREEKRHKRQYDDDDFGSRPREDHISREERGSRQRDYDSASRSTDDYDRKPGDRSNRHDTDRSEPKQKYDLGRREENRSRR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0703 314 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Acco05g0703 314 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Acco05g0703 314 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Acco05g0703 314 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Acco05g0703 314 Gene3D - 26 132 IPR012677 -
Acco05g0703 314 MobiDBLite consensus disorder prediction 171 314 - -
Acco05g0703 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Acco05g0703 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Acco05g0703 314 SMART rrm1_1 37 110 IPR000504 GO:0003723
Acco05g0703 314 MobiDBLite consensus disorder prediction 161 314 - -
Acco05g0703 314 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Acco05g0703 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Acco05g0703 314 Gene3D - 133 242 - -
Acco05g0703 314 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Acco05g0703 314 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0703 Acco-ChrAcco05 10567742 10570020 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0703 24 128 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 7.15e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g0703 05 10567742 10570020 Acco05g0703 05 10567742 10570020 ECH