Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0650 ATGCCTTCTCTTCCTGTCTTCGATATTGCTCATTCCGAGACTCCGAAAGATAACAAGGTGAAGAAGAAGATGAAGAACGAGGTCCTAGATGGGGTTTCGGCCCAGAAGAAGAAGGAAAGTAAAAAGCGTAAAGCTCTGTATGTTGAGACGATGGGGAGTGAGGATGAAGTAAAGAGTGAGACGGCGAGTTCCGAGTTGGTTGAGCCTGTGAAAGAAAAGAGGAAGAAGAAAAAGACTAAGGTGGAGGAACCTGGACATAAAGAGGAAGAGGTTGAGAAGGAGAATGCTATTTTAAACTTTAGGATATCCGCGCCATTGAGGACAAAGTTGAAAGAGAAGGGAATTGAATCACTATTTCCTATTCAGGCCATGACTTTTGATACTGTCCTAGATGGTTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTTGCCTTTGTGTTACCGATATTAGAGTCTTTAACAAATTGTCCTGCAAAAGCAGTGAGAAAGTCTGGATATGGAAAGGCTCCTTGTGTTCTTGTGCTCTTACCTACCAGAGAATTGGCCAAACAGGTGTTTTCTGATTTTGAAGTTTATGGTGGGGCATTGGGATTGACATCTTGTTGTTTATATGGTGGAGCTCCATATCAATCACAAGAATTTAAACTGAAGAAGGGCGTTGATGTTGTTGTTGGAACTCCAGGACGCATAAAAGATCACATAGAGAGGAAAAATCTTGACCTGAGCCAACTAAAGTTCCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTAGAACTCATTCTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCGAGCTGGGTTAAGAGTATTTCTATGAAATTTCTGAAACCTGATAAAAAGACTGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTTAGGCATATTGTTCTCCCGTGTTCTAGTACTGCCAGGTCCCAACTTATTCCAGACGTTATACGTTGCTATTGCAATGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTAGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAGCAGTCACAACGTGAGGTCACCTTGGCTGGTTTCAGGGCTGGCAAGTTTACTACATTAGTGGCCACTAATGTGGCGGCGCGTGGTTTGGACATTAATGATGTTCAGTTAATTATCCAGTGTGAACCCCCACGTGATGTAGAAGATTATATCCATCGGTCTGGGCGCACTGGAAGAGCAGCTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAATATTATATCAAGGATAGAAAGAGAATCTGGTGTGAGATTTGAACACGTATCTGCTCCCCAGCCTGCTGATATTGCCAAAGCTGTTGGTGGGAATGCTGCTAAAATGATAACCCAAGTGTCTGATGATGTTATCCCTGCATTCAAATCTGCTGCGGAGGATCTTTTACACAATTCAGGCATAACAGCTGTTGAATTGCTTGCAAAAGCTCTTGCCAAGACTGTTGGTTATACAGAGATAAAGAAAAGATCACTACTCACTTCCATGGAGAACCATGTTACATTACTTGTTGAGATTGGAAGACCCATCTACACTCCATCATTTGCATTTGGAATCTTGAGGAGATTCTTGCCTCAGGAGAAGGTTGACTCAGTGAAGGGTATTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTGTCAACTGAAGACTTGGATGTCTTTCTTACTGGTTCGGAAAATGCTGCAAATGTAAGTTTACAAGTACTGGAAGCATTGCCAAGTTTGCAAGAAAGAGAACCATCAAGAGGTAGATTTGGCGGTGGACGGGGTAGCGGCAGTGGTGGCAACAGGTTTTCCGGTGGAAGGGGCGGTGGCAGATTTTCTAATGATCGAAATGGGATAGTAGCTTGGACCAATCGAGGTAGCCGGAGGATGGAGAAGTACTTCGGAAATGCTTATCGCGGCGACCCAGGCGTGCCGCATGCTGACTCGGAAAGATTCTCCAACATTTGGATCGGCGCTATTGCATTCAGTGCTATCACCTATTTTAATCCCTACAGTATGTGGCAACTCTCCAATCAGTTCAACTGGCACGATAAAGCAATGCTATTTGAGCAGTATCATTGGAAACAAGCAAGGAAAAAGAACGAGCCTTATAAATTCTTGTGGAACCAGTACATGAACAAGAGACTTCGAAAGGCATACTACTACAATTGGCCTATTTTTTTCCCTTAA 2322 0.4371 MPSLPVFDIAHSETPKDNKVKKKMKNEVLDGVSAQKKKESKKRKALYVETMGSEDEVKSETASSELVEPVKEKRKKKKTKVEEPGHKEEEVEKENAILNFRISAPLRTKLKEKGIESLFPIQAMTFDTVLDGSDLVGRARTGQGKTLAFVLPILESLTNCPAKAVRKSGYGKAPCVLVLLPTRELAKQVFSDFEVYGGALGLTSCCLYGGAPYQSQEFKLKKGVDVVVGTPGRIKDHIERKNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPSWVKSISMKFLKPDKKTADLVGNEKMKASTNVRHIVLPCSSTARSQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLAGFRAGKFTTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAANTGVAVMLYDPRRSNIISRIERESGVRFEHVSAPQPADIAKAVGGNAAKMITQVSDDVIPAFKSAAEDLLHNSGITAVELLAKALAKTVGYTEIKKRSLLTSMENHVTLLVEIGRPIYTPSFAFGILRRFLPQEKVDSVKGITLTADGNGAVFDVSTEDLDVFLTGSENAANVSLQVLEALPSLQEREPSRGRFGGGRGSGSGGNRFSGGRGGGRFSNDRNGIVAWTNRGSRRMEKYFGNAYRGDPGVPHADSERFSNIWIGAIAFSAITYFNPYSMWQLSNQFNWHDKAMLFEQYHWKQARKKNEPYKFLWNQYMNKRLRKAYYYNWPIFFP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0650 773 MobiDBLite consensus disorder prediction 1 20 - -
Acco05g0650 773 CDD DEADc 106 303 - -
Acco05g0650 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 461 IPR027417 -
Acco05g0650 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 308 IPR014001 -
Acco05g0650 773 CDD SF2_C_DEAD 323 449 - -
Acco05g0650 773 Gene3D - 320 548 IPR027417 -
Acco05g0650 773 FunFam DEAD-box ATP-dependent RNA helicase 7 547 619 - -
Acco05g0650 773 Gene3D - 14 308 IPR027417 -
Acco05g0650 773 MobiDBLite consensus disorder prediction 627 656 - -
Acco05g0650 773 Pfam DEAD/DEAH box helicase 119 296 IPR011545 GO:0003676|GO:0005524
Acco05g0650 773 SUPERFAMILY RNA-binding domain, RBD 534 617 IPR035979 GO:0003676
Acco05g0650 773 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 252 260 IPR000629 -
Acco05g0650 773 Gene3D - 549 619 - -
Acco05g0650 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 486 - -
Acco05g0650 773 MobiDBLite consensus disorder prediction 50 90 - -
Acco05g0650 773 SMART ultradead3 114 326 IPR014001 -
Acco05g0650 773 CDD GUCT_RH7_like 537 622 - -
Acco05g0650 773 Pfam Helicase conserved C-terminal domain 348 439 IPR001650 -
Acco05g0650 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 480 IPR001650 -
Acco05g0650 773 SMART helicmild6 363 440 IPR001650 -
Acco05g0650 773 Pfam GUCT (NUC152) domain 530 625 IPR012562 GO:0003723|GO:0004386|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0650 Acco-ChrAcco05 9434352 9440328 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0650 132 480 Eukaryotic Initiation Factors Gene Family AT1G72730 31.373 3.54e-42 157