Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0633 ATGCCACAAGAAGCCAGTCCGCTTGTTATTTCCCTTTGTTTCCGACCCGACGACGAACAAAACCCAAACGGGGCCGAAGAACAAAACCCAGGTAGCTTGCCCCCATCTCCCTCTCTCTCTCCGGTCTACCTCCTCCGTCAAATCTTTCCCTTTGTTCATCGATTCCCAAGTACTCATGCAAAGATGAGCTCCTTCTCCATTACACGGAAAAAAACACCCTTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCGGAAGATGAAACTGCAAGGTTATATGCTGAATTTGTTGAGTCATTTCAAGGTGATATCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGAGAAAGTAAAAGCAGACGCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTTCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCTCCTCCTTTGGCAACCAAGGGAAAAGAATCTGAGAAGAAAAAAGAGGAGGAGAAGCCCAGGGAGAAGGATAAAGGTAAGTCACGTAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGATCGTGAAAATTGGCGTGATGGACGCAACACAGAACATTCTACTATTAGTCGCTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGTGTTAAAATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTTGTTTATGAGTATGAATTGAAAATTGGGTGGGGTAAATCTGTTGCTCTCCCATCGCAAGCGCTGCCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCTACGGTGATCTTGTCTGGTCCTTCTGGTCCATCAGGTCCACCAGTAACTTCTGTGCCGAATCAGAACTCTGAACTGGTTCTTACTCCTAATATTCCCGATATAATGGTCATACCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTCTACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCCTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCATCATTGCCTTCTGCAAGAAGTCCAGAACATGAAAAGGAGTTAGGTTCCACACATGCTGCAGGAAGAAGCAGGCGTGTGGAACCTGAAAGAACACTGACTGATGCACAAAGGGACGAATTTGAGGATATGCTGCGTGCTTTAACATTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCTTGACACTCAAAGAGACCCCTATTCCAACTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCAGTAAGAAATGCATCTGCATATCGCACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAACAGGACGCATTACTGCTGAGGCCCTTAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACGTTTATTCGTTCTGGCAACTCTGGTGTTACACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATAATGTTGATGGCAGCAAGAGCAACCAAGATTCTGCATTGGCAATGGGCCGAGGAGCTGCAATGAAGGAGCTAATGTCTCTTCCTCTTGCTGAGCTGGAAAGACGATGTCGACACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTAAGCCTGGAGGAGGCAGAAAAGCAAAGGGGCTATGAGCTAGATGATGAATTGAAACATGCTCAGAACCAAGCAAGTTCTGGGAGATATTCAAGTAGTCGGAGAGAAACAAGCATTGAGCCTGAACCAGTAGATTTCTCTGGATGGAACCATTATGACGAGGATGATTCACACTCACAAGGCAAAGGCTCAGTATCTCTGGCACAAACTTTGCCCATTCCACTCCCTGAATTGAAAGCCTTCACAAAAAAAGAAAAGAGTGATCCAGTTTTACCAGCTTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAACAAAAGGGTCGTGGAAAGGGTTTGGGATTAAGCTACTCGTCTTCTGGTAGTGAGAATGCTGGTGATGGTACTGTTAAGGCAGATGAGCTGGAGTCTGTAGCTGATACAAGCATTTCTGCACCAACTGATAGTGGAATGAATGAAGAGCTGAGGCAAAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAATCTCTTGAAGAAAGGGGAATAAAAAATTTGGAGGAAATTGAGAGGAAAGTCACACTGCACAGGAAACGGCTGCAGGCAGAGTTTGGATTATCAGATTCAGGAGAAGACGGTCAAGGAAGTAGAAGAACATCTTCAGAGAGGAGGGACATGCGAGACGATTCACATGCTGTCTCAAGAAAACGCCACCATAGTCCTAGTCGAAGTCATAGTCCACCACGAAGATCATCTGGCAGAGACAGGGAGAAGGAATATGATGCAGACAGGGACCGAGAGAAAGGTGGAAGCAGAGAGAGGGATGATCATGAAAAGGAGAGAGGCAAAGATAGGGACCGGAGGAGACGGGTGAAATAA 3060 0.4444 MPQEASPLVISLCFRPDDEQNPNGAEEQNPGSLPPSPSLSPVYLLRQIFPFVHRFPSTHAKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDITPGSKAFVRGGTINPNEKVKADAEGEKSKDGVSGSKKGSRYVPSFIPPPLATKGKESEKKKEEEKPREKDKGKSRNIDNFMEELKHEQEMRERRNQDRENWRDGRNTEHSTISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPSGPPVTSVPNQNSELVLTPNIPDIMVIPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSARSPEHEKELGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFIRSGNSGVTLFHSICGDAPEIEKNIHSEDNVDGSKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKHAQNQASSGRYSSSRRETSIEPEPVDFSGWNHYDEDDSHSQGKGSVSLAQTLPIPLPELKAFTKKEKSDPVLPASKWAREDDESDDEQKGRGKGLGLSYSSSGSENAGDGTVKADELESVADTSISAPTDSGMNEELRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSSERRDMRDDSHAVSRKRHHSPSRSHSPPRRSSGRDREKEYDADRDREKGGSRERDDHEKERGKDRDRRRRVK 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0633 1019 Pfam CID domain 514 642 IPR006569 -
Acco05g0633 1019 ProSiteProfiles SURP motif repeat profile. 399 442 IPR000061 GO:0003723|GO:0006396
Acco05g0633 1019 SMART 558neu5 514 649 IPR006569 -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 62 91 - -
Acco05g0633 1019 Coils Coil 910 930 - -
Acco05g0633 1019 CDD RRM_SR140 246 329 IPR035009 -
Acco05g0633 1019 SUPERFAMILY Surp module (SWAP domain) 373 454 IPR035967 GO:0003723|GO:0006396
Acco05g0633 1019 Coils Coil 884 904 - -
Acco05g0633 1019 Gene3D - 883 934 - -
Acco05g0633 1019 PANTHER RNA PROCESSING PROTEIN LD23810P 60 972 - -
Acco05g0633 1019 Gene3D - 157 330 IPR012677 -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 475 505 - -
Acco05g0633 1019 SUPERFAMILY ENTH/VHS domain 511 651 IPR008942 -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 942 962 - -
Acco05g0633 1019 ProSiteProfiles CID domain profile. 507 652 IPR006569 -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 810 842 - -
Acco05g0633 1019 Coils Coil 512 532 - -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 928 1019 - -
Acco05g0633 1019 Gene3D - 507 654 IPR008942 -
Acco05g0633 1019 SUPERFAMILY RNA-binding domain, RBD 240 335 IPR035979 GO:0003676
Acco05g0633 1019 Gene3D Surp module 385 454 IPR035967 GO:0003723|GO:0006396
Acco05g0633 1019 MobiDBLite consensus disorder prediction 72 91 - -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 766 791 - -
Acco05g0633 1019 SMART surpneu2 397 451 IPR000061 GO:0003723|GO:0006396
Acco05g0633 1019 SMART cwf21_2 883 932 IPR013170 -
Acco05g0633 1019 SMART rrm1_1 248 324 IPR000504 GO:0003723
Acco05g0633 1019 MobiDBLite consensus disorder prediction 810 886 - -
Acco05g0633 1019 Pfam Surp module 397 449 IPR000061 GO:0003723|GO:0006396
Acco05g0633 1019 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 321 IPR000504 GO:0003723
Acco05g0633 1019 MobiDBLite consensus disorder prediction 481 505 - -
Acco05g0633 1019 ProSiteProfiles SAP motif profile. 701 735 IPR003034 -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 975 1012 - -
Acco05g0633 1019 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 328 IPR000504 GO:0003723
Acco05g0633 1019 MobiDBLite consensus disorder prediction 747 795 - -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 126 141 - -
Acco05g0633 1019 CDD cwf21_RRC1-like 883 932 IPR047491 -
Acco05g0633 1019 Coils Coil 78 98 - -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 14 39 - -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 107 226 - -
Acco05g0633 1019 MobiDBLite consensus disorder prediction 160 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0633 Acco-ChrAcco05 9188821 9201971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0633 244 324 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.39e-06 49.3