Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0616 ATGGGTAAGAAAAAGAAACAAGTTGGAGAAAAATCAAGTGATAAGGATGATGAGGCTTTCATTCTTAAGTCTCAAGAGTTAAAACAAGAAGGGAACAAGATGTTCCAAAGGAAAAAATATGAAGAAGCCCTCCAAAAATATGAGGAAGCCATTAAATTCCTACCAGAAAATCATATAGAAGTGTCTTGCCTACGGAGTAAAAAGGCTGCATGCTACATGCAGGATGAGGGATATGGAGGATACCCGGGCGCCATTTATGAATGTAATTTAGCTCTTAAAGTTAATCCAAAGTACAGTAAAGCCCTTTTGAATAGGGCAAGTTGTTATGAGGCTATAAATTGTCTAAATAATGCTCTAAGAGATGTTAGTACTGTACTAAAGATGGAGCCAAACAATAAGATGGCGTTGGGAATTTTTGAGAAAGTGAAAAATAAACTTGAAAAGAGGGGATTAAATGTAGCTGACTTTCCTATAATTGAGCTGCCTTCTGATCATGCTGGACCTTCTCGTGTGCCTCCAGAAGAAAAGAACGACAAGACAAAAAAGGTTCAGTTATTGACTGCAGATAATGTAGGGCTCCATCAAAAGCTTGCTGTGGAAGAGTTGAAAGCCAAGAAATTGAAGGAGAAGGAGGCTGTGAACATATCCAATAAAGAGAAGTTGGAGGACAGTATTGGGAAGGAGAAGGTGGTTGCAAACAAATCTGAAGAAAAGGTGGACAAGGAAATGATCAGTGAGAAGAAGGCTTATACAAAGGAGGTTATTGAGGGGAAATTTAGGGATAGAAAGGAAGAAGAAACTAAGAGAGTGAAACTTGTTTATGGTGAGGACATTAGATTTGCAACATTAAAAATCAATTGTAGCCTCCAGCATCTAAGAGAAGTTATCAGCAACCGATTTCCAAGGCTAGGAGCGGTTCTTGTCAAATACGAGGATGAAGAAGGTGATTTAGTCACAATCACTTGCGATGAAGAATTAAGATTGGCTGAAACATCAACAGGATCAAAGAGTTATATGCGCCTACACATAGTGGATACTGATCCTAAGCAGGATCCATTGTTCGAGAAATTTTGTTAG 1077 0.3853 MGKKKKQVGEKSSDKDDEAFILKSQELKQEGNKMFQRKKYEEALQKYEEAIKFLPENHIEVSCLRSKKAACYMQDEGYGGYPGAIYECNLALKVNPKYSKALLNRASCYEAINCLNNALRDVSTVLKMEPNNKMALGIFEKVKNKLEKRGLNVADFPIIELPSDHAGPSRVPPEEKNDKTKKVQLLTADNVGLHQKLAVEELKAKKLKEKEAVNISNKEKLEDSIGKEKVVANKSEEKVDKEMISEKKAYTKEVIEGKFRDRKEEETKRVKLVYGEDIRFATLKINCSLQHLREVISNRFPRLGAVLVKYEDEEGDLVTITCDEELRLAETSTGSKSYMRLHIVDTDPKQDPLFEKFC 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0616 358 PANTHER PROTEIN CLMP1 5 354 IPR044517 -
Acco05g0616 358 Coils Coil 37 57 - -
Acco05g0616 358 Coils Coil 199 219 - -
Acco05g0616 358 Gene3D - 244 345 - -
Acco05g0616 358 Gene3D Tetratricopeptide repeat domain 22 153 IPR011990 GO:0005515
Acco05g0616 358 SUPERFAMILY TPR-like 25 148 IPR011990 GO:0005515
Acco05g0616 358 SUPERFAMILY CAD & PB1 domains 268 354 - -
Acco05g0616 358 Pfam PB1 domain 268 345 IPR000270 GO:0005515
Acco05g0616 358 ProSiteProfiles PB1 domain profile. 267 346 IPR000270 GO:0005515
Acco05g0616 358 CDD PB1 269 329 - -
Acco05g0616 358 SMART tpr_5 99 132 IPR019734 GO:0005515
Acco05g0616 358 SMART tpr_5 24 57 IPR019734 GO:0005515
Acco05g0616 358 SMART PB1_new 267 346 IPR000270 GO:0005515
Acco05g0616 358 ProSiteProfiles TPR repeat profile. 24 57 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0616 Acco-ChrAcco05 8872024 8873100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0616 12 133 Calmodulin-binding Proteins AT3G25230 30.769 1.03e-06 48.5