Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0583 ATGGAGTTTGTGGGCAAAACTGTTAAGAAGGAGGTCAAGGGGGTTGGGATTATCTCGGGAACAGTGAAATCTTTCGATTCATCTTCTGGGTTCGTTGAGATCGTATACGAAGATGGTAATTCTGAGGAGCTTGAATCGTCTAACGTGGCTTCTCTTGTTCAAGGTGAACCAGAGGTTGTAAAGGTGATGAAGAGCAGGGGAAGAAAGCCCAAGAAGAGGCGTCGTGTAGAAAAGAAGCATGACACCAGTGGAAGCCCAGGTAATATTTATGAGAATTTCGGTGTTTCTGATTCTGAATTTAGGGGGATTTCGGATGAAGGTGTTTCTTCTAGTGGGAATTTAAAAGTAAATGGTGAATTAGAGATTGGGTTGAGGGGAAGCCCGGGTATGGCAAATGGGGCGGGGGGGATTTTAACTTTGGGAACTGAAATCATGGGGAATTTGAATTGGAGTGCCAACTCTAACGGGATCAAAGAAGTTCAACGGACGGAAAGCGGGCATGAAGAGAAATCCAAAGAAAGTATATCTACTAATGGTAATTCGAGCATAACGGATTGTGTAAAAGATGGGCTTGATTTGAATGCCAGACTTAACCTGAACGAGGTTTGGGATCTGAATGATGGGTGTAGTTCACATGTTAATACTGAGGATGATTTGAAGAAAGGGGGTTGCATTGATTTAAATGTGGATGTGAATCATGAAACTGATTCCTGTGCGAACTTGAGTAATTTAGGTTGTCCGGCAGCTGAAATGTCGAAGCGGGAATGTCATTTTGATTTGAATGTGGAGGTATGTGATGAAGCTAAGGAAACTCAGGGTGATAGTGCTGGAGACAAACTGTTAGATGGAGGTGATTCGTCTGGTAAAATGGGGCAAAGCCCTAAGTCAGAGACAAATATTAATCAAAATTCTGTACAAGATGATAGTGTTAAAAGAAATTTGGATATCACTGACTCGGTGAAATTGGAGGGAATTGATAGTTTCCATGGGTGTGCAGGTCAAGACGCTTCTGTGAGTTTGATTGAGGAAAAGGAAGATGTAATTTACAATGGAGGTACTGTGGCTCTTGACTCTCTTGGGGTTTCGAACGCTATTTCTAAGGATTGTGATTCTGCAGAGGTTTGGCAGGAGCATAAGCCTTCTGAAACTGGTATTGCTATAACTCTTGAATGTCAAAATGAGCCTGGTAGCCAATCTAAACAAGGAAGTGGCCGAAGAAAGAGAAGAAAACTATCAGATAATCTGAAATCTGCTCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTCTAAAACGTGATTCAAGCCCTATAACAATGAATGCGATGGATGATCCTTTGATGTCTCCAGGGCCCAGTGCCATAACAGAAGAAAAAACAGTTGTTTCTGGTTCCGAGCAGTATGAACAGTGCAGTGAACTTCCGCCAAAGCTGCAACTACCCCCTTCTTCTCAAAATTTGAACTTAGATGACATTCCTGTTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTATACTATTTTTAAGTCCTTTTGAGTTGGAGGATTTTGTAACTGCATTGAAGAGTGTAAATCCTAACATATTATTTGACAACATTCATTTTTCTATTTTACAAACTCTTAGAAAGCACTTGGAATACCTTTCAAATGAGGGTTGCCAATCTGCATCCGATTGCTTGAGAAATTTGAACTGGGATTTGTTGGACCTTGTCACATGGCCCATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCTGGACTTCAAACTGGTTTTGATCTTAAGTACTTGATGTTTGGAGGTGACTACTACAAGCAGCCTGTAACTTTGAAGATTGAAATTCTTCAGTGTCTTTGTGATGATATGATGGAAGTGGAAGCCATGAGGTTGGAGCTTAGCAGAAGATGTTTGGTGACTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGATCTCTAATGGACATGTCTGGCAGCTTTTCCATGTCTGAGGAGATTGTTGATGCCACAAATGACTGGAACAGCGATGAATGCTGCCTTTGCAAGATGGATGGAAATTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCCAGGTGTGTAGGGGTTGCAAGTGACCATTTACCCGAAGGTGACTGGTATTGCCCTGAATGTGCATTTGGCAGACGTAACCCTTGGATGAAACCACAAAAATCGCTTCGAGGAGCAGACCTTTTAGCGATTGATCCTCATGGTCGTCTTTATTTTCATAGCTGTGGTTACCTATTAGTGTCAGATTCATCTGACATGAGATCCTTGTTCAATTACTACCATATAAATGATCTGCATGTTGTAATTGAAGTGTTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCACTGGGATATTCCTTTTAACTTTATCTCAAATCAAAGTGCCAGCAGGAGCATGCATATGAAGACAGAATCCTCTGCTACATATCCATCTTCAGCACCTTTTTCATCCTTGGAAGTATTCTTAGACAAGAATCAGGCTGCTGATCAAGGAAACTATGATGAAACTTATACTGTACAACCTGTTGGCCAAGAGTTTCTCAAAGTTGAGACACGAGTAGATCCAGTGATAATGACAGAAAGTCGCTGTGTTGCTTCAGAGGTATCAGCTGATACCACAAAAATGAGGTCAACCACTGATGAAGATCCTCTAATACATGGACTCCATGATTCCAGAAGATCTGATGGGGCCCTGAATCAGCCAGGAATACCAGAGAAATTGCACCCAGTCAGTCACTCTTTTTTGAGGTCTACCCGCTTACATACAAGCCATAAGGGAAACTTAACATCTGCAGGTATTGGTAATCCTGCATCGGCTATGTCCACTGGGAATAGAGCTACTTCAGAAATGCCATGTCGAAATGACTACATAAACTATTACAGCTTTGCTCGAACAGCTTCATTAGTGGCAGAGGAGTTGATACGTAAATCCCCTGAAAAGGTCAACAAGAGTATTGAAATGTTTGAAGAAGACTTAATTTCAGAACAAGCGAAGACTATTATTAAGAAATCTAGGAACTTCTACTGGCCAAGTTCTCAAAATATTAATGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTTTACGTGCAAAGTTGAAAATGATGACAGAGATTGCTTGTTTAACACTGTGGTGATGCCGGTTCAGGAAGTTTCTAAAAGTGATTTAGTTGGTTTTCAGCCAAAGAACCAGGATGCTCATCTTAGAGATGTCATATTTTATATTCTCTCCCTCGAGGATCGATTACGTGGGCTTCTATTGGGGCCTTGGTTGAGCCTCCATCATTCTAAGAATTGGCGTAACAATCTTCTCAAGGCATCTGATGTTGCATCTATTAAATGCTCATTATTGACTTTAGAGTCCAATTTGCGGCCTCTTGCTCTTTCGGCAGACTGGTGGAAACATTTGGATTCTGCTGTTACCATGGGTTCAGCCTGTCATATTGTGACCAGTTCACGCACTTCTTGGAGGCATAGTATTGGAAGAAAAAGGGCAAGGTGCTCTGATATTGAGTCCAGTGCATCTTCTAATGCAAGTGGTTTGGGATCATATTGGTGGAGAGGGGGTCGGCTTTCCCGTCATTTGTTTAATTGGAAGGTTCTGCCCCACTCTTTGGTTGCCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCAGGCATTCTATATCTTGAGAATTCTGATTTTTCAAAGAGAAGCAAATGTGTTGCTTGGAGAGCTGCTGTTGAGACATCAATTAGTGTGGAGCAACTTGCTGTCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACATTGAGAATACTCATCCTCTATGTGTGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTACGTAGGAAGAGCACTGAAAAGGAATGTGTAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTATTCCAGATATTATCAAGAAACATGGTTCGTTGTTGGAAGAATCCTTAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATTTTATAAAGAATTTTGAGGACAAAAGAATTGCTCGCAAGTCCAATGAAATGAAACCAGGAAAAGTTCTGGAGAATAGTGGATTTAATAAGAGATCTACCCAAAAACGGGGGTTTTCATATTTGTTTTCTCGGATGGAAAAGCCTACCTATCATCAGTGTGGCCACTGCAACAAAGATGTTCCAACTAGGGAAGCTGTGAGCTGCCAGTACTGCAATGGATTCTTCCATAAGAGGCATGCCAGAAAATCCGGTGGCACCGCTGAATGCACATATTCATGTCACAGATGCCTGGATGGGATGCGTGTGAATTCTAATTCAAAAAGAAGAAAACTTGACCCAAAACTAGGGAATATTCAGTCACAAAAGGGTCAAAAGGCTCCGTCAGTGGGTAGAGGTAGACCAGCTAAGCAAAAAGGTGGTAAAAAGCCATTGACTAAGAGACGGCAAGGTAAATCTCAAACCAAGAAAACAGTCCCACCAAGCATACCTCTTCGTCGTTCAGCCAGGAAGGCCAAATGTTTGTATGTGCAAAAGAAAAGGAATGTAGGACGTAAAAAAGGAAAGAAAAGTAAATCCAAGAAGGTAACACTAAGGAAGCCTAAGGAAACTACTTCTCGTTCTAAGGAAACGGTAACTTTTGAGCGTAAGAAAAGAACTCAAGTCTGTAATAGTTACTGGCTTAATGGTCTTAAGCTGTCCACAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAGCATCTTGCCCCCTCAGAAGGTTCTTCTGGCACCTTTGATCAACCTAAATGTCATCTCTGTTGTGGAGATGGGTGCACTTTGGAATATATTGCTTGTGAAATATGTGGAGAGTGGTTTCATGGGGATGCTTTTGGACTCACTGTAGAGAATGTCAAACAACTTGTTGGATTTAGGTGTCATATTTGTCGTGATAGGATTGCGCCAATTTGTCCCCACAAGAACAGTAATGCCTTGACGCATGCTGAAACCAAAGCTGCAACTGGGTGTGCTGAGGAACTACCTAATCCTGTTTCACTTCAGCCATTGAGTAAGGTTTGA 5190 0.4148 MEFVGKTVKKEVKGVGIISGTVKSFDSSSGFVEIVYEDGNSEELESSNVASLVQGEPEVVKVMKSRGRKPKKRRRVEKKHDTSGSPGNIYENFGVSDSEFRGISDEGVSSSGNLKVNGELEIGLRGSPGMANGAGGILTLGTEIMGNLNWSANSNGIKEVQRTESGHEEKSKESISTNGNSSITDCVKDGLDLNARLNLNEVWDLNDGCSSHVNTEDDLKKGGCIDLNVDVNHETDSCANLSNLGCPAAEMSKRECHFDLNVEVCDEAKETQGDSAGDKLLDGGDSSGKMGQSPKSETNINQNSVQDDSVKRNLDITDSVKLEGIDSFHGCAGQDASVSLIEEKEDVIYNGGTVALDSLGVSNAISKDCDSAEVWQEHKPSETGIAITLECQNEPGSQSKQGSGRRKRRKLSDNLKSAPETVLRRSSRRASALKRDSSPITMNAMDDPLMSPGPSAITEEKTVVSGSEQYEQCSELPPKLQLPPSSQNLNLDDIPVLDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHFSILQTLRKHLEYLSNEGCQSASDCLRNLNWDLLDLVTWPIFMAEYLLIHGSGLQTGFDLKYLMFGGDYYKQPVTLKIEILQCLCDDMMEVEAMRLELSRRCLVTEADMSFDQSMYFDICKKRRSLMDMSGSFSMSEEIVDATNDWNSDECCLCKMDGNLICCDGCPAAFHSRCVGVASDHLPEGDWYCPECAFGRRNPWMKPQKSLRGADLLAIDPHGRLYFHSCGYLLVSDSSDMRSLFNYYHINDLHVVIEVLKAADAFYGSILMAICKHWDIPFNFISNQSASRSMHMKTESSATYPSSAPFSSLEVFLDKNQAADQGNYDETYTVQPVGQEFLKVETRVDPVIMTESRCVASEVSADTTKMRSTTDEDPLIHGLHDSRRSDGALNQPGIPEKLHPVSHSFLRSTRLHTSHKGNLTSAGIGNPASAMSTGNRATSEMPCRNDYINYYSFARTASLVAEELIRKSPEKVNKSIEMFEEDLISEQAKTIIKKSRNFYWPSSQNINAAAQKEKCGWCFTCKVENDDRDCLFNTVVMPVQEVSKSDLVGFQPKNQDAHLRDVIFYILSLEDRLRGLLLGPWLSLHHSKNWRNNLLKASDVASIKCSLLTLESNLRPLALSADWWKHLDSAVTMGSACHIVTSSRTSWRHSIGRKRARCSDIESSASSNASGLGSYWWRGGRLSRHLFNWKVLPHSLVAKAARQAGCTKIPGILYLENSDFSKRSKCVAWRAAVETSISVEQLAVQVRELDSNIRWHDIENTHPLCVLDKESRKSIRLFKKVIVRRKSTEKECVKYLLDFGKRRAIPDIIKKHGSLLEESLSDRKKYWLEEPYVPLHFIKNFEDKRIARKSNEMKPGKVLENSGFNKRSTQKRGFSYLFSRMEKPTYHQCGHCNKDVPTREAVSCQYCNGFFHKRHARKSGGTAECTYSCHRCLDGMRVNSNSKRRKLDPKLGNIQSQKGQKAPSVGRGRPAKQKGGKKPLTKRRQGKSQTKKTVPPSIPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKVTLRKPKETTSRSKETVTFERKKRTQVCNSYWLNGLKLSTKPNDERVMLFKEKKHLAPSEGSSGTFDQPKCHLCCGDGCTLEYIACEICGEWFHGDAFGLTVENVKQLVGFRCHICRDRIAPICPHKNSNALTHAETKAATGCAEELPNPVSLQPLSKV 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0583 1729 CDD PHD1_AIRE 690 732 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 1547 1572 - -
Acco05g0583 1729 ProSitePatterns Zinc finger PHD-type signature. 691 732 IPR019786 -
Acco05g0583 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1633 1692 IPR013083 -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 160 179 - -
Acco05g0583 1729 ProSiteProfiles Zinc finger PHD-type profile. 688 735 IPR019787 -
Acco05g0583 1729 Pfam DDT domain 496 549 IPR018501 -
Acco05g0583 1729 SMART testlast3 493 553 IPR018501 -
Acco05g0583 1729 ProSiteProfiles DDT domain profile. 493 553 IPR018501 -
Acco05g0583 1729 PANTHER PHD FINGER FAMILY PROTEIN 2 1692 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 900 939 - -
Acco05g0583 1729 SUPERFAMILY FYVE/PHD zinc finger 1637 1692 IPR011011 -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 1480 1587 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 1573 1587 - -
Acco05g0583 1729 SMART PHD_3 690 733 IPR001965 -
Acco05g0583 1729 SMART PHD_3 1640 1687 IPR001965 -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 905 924 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 957 978 - -
Acco05g0583 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 748 IPR013083 -
Acco05g0583 1729 Pfam PHD-finger 691 733 IPR019787 -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 271 309 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 1511 1529 - -
Acco05g0583 1729 SUPERFAMILY FYVE/PHD zinc finger 662 734 IPR011011 -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 289 309 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 63 91 - -
Acco05g0583 1729 MobiDBLite consensus disorder prediction 392 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0583 Acco-ChrAcco05 8342944 8360094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0583 1 1699 PHD Transcription Factor Family AT5G12400 40.367 0.0 1116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Acco05g0583 DDT 6.7e-12 No_clan