Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g0484 ATGGATTCTGATGAAGAAAATAGGTTACTTTATTATCAGCCAGTTAGGTCTCATGAAGATGCTGAGCTTGATCGTCATAAGATGATTGAGGAAGAGAAGGATCAGGAGACCTCCGACGAGGAAGAGAAGATGAGCCAAAAGCCGTCTTCGTCTTGCTCAAAGCTCCACTCAGGAATACCTAAGATTATATTTAAAAGATCTTCAGTTCCAGCTCCAGGTGAAGGTTCAGCTTCAGGTTCATCAGTTCGAATTTGTGAATTCTGTGGAAAACAATTCAATTCAGGAAAAGCCCTAGGAGGCCATAGAAGATGTCACATTCAAGCTCAGAGAAAGATGGAAGAACAACAGCGAAAAAAGGTCAGGTTTACCCTAAGAATTAAGTCCAAGAATTTGGTCATCCGCGATGATGATAATAATAATCTCATAAAATCGAGTAGTATTGGGAATCCCAATGATTCTTCTCGGAGATTTTTCCGTTGCCTTGTATGCGACAAGGATTTTCCATCACAGAAGTCACTGTGCGGCCATATGAGATGTCATCCAGACAGAGATTGGAGAGGTGTGAACCCTCCTTCCGTTACTGCTGATAACGCTCTAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGAAGAACAAGATAATCAAAATCACAATAAGAGCTCTTCACCTTCAACTTCAGAAGAATCATTATCAGTACCGGTTGATCTTTCTTCATCTTGTTCTGAAAGCAGCTGGCTTAAGAAAGATATGAGAGGAAGAAAACGCATTGGAGAAGCAGAAGCTGCTCATATTGCCGCTCTAACCCTTTTGGATATGCATGTCTTTGGTAACTACCGCCTTCCTCATCGTCTTCCAACTCGCGAGCCTACTCCTGAAAAAGCAGCAGTCTTACCAGTCGAGAAAAGACAGAAGAATGTGATGAAGAACCATGTGGCAGCTGGTTCTTCTTCTTCTTCACCAGCTGGAACGAAAAGTTTGGATAATTGCAAGGAGAAAATAGAGGGTAGTGATGGGAATGAAGAATTGAACGCTGATATGAAATTGATCTCGTTAAAGAAGGAGAAGAAGAATCTCAATAAGAAGATGAAATTAGCTCCAGAGATCATCAAGTCAGAAGAAGAAACTATGAAGCAAGAAGAAGTGAAGCCATCACAAAGCTATGTATGTGACATCTGTAATAAATCTTTCTCATGTTTTCAAGCCTTAGGAGGACACAAAACCAAACACAGGAAGAACATAGTTAAAAGCATGAAGGGCAAGGAAGTGGTGGAACAAAGACCAGAAGAAGAACAAAAAAAAGAAGAAGACAAGCTTTGCATTAATGGAGCATTAAGTGGTGAAGAAGCAGCGGCTTTGATTAGTAGTGAAGAGAGATTAGTAATAAGTTCGAATGATAATGAGAGTAACAGTAATGAAGAGGAAGTGGGAGAAGCAAGACAACAATCTGCTTCAGGAATAAGGGGTTTTGATCTGAATGTGCCTTTTGTTTTGGAGGACGAAGCAACTGATTTATAA 1524 0.4029 MDSDEENRLLYYQPVRSHEDAELDRHKMIEEEKDQETSDEEEKMSQKPSSSCSKLHSGIPKIIFKRSSVPAPGEGSASGSSVRICEFCGKQFNSGKALGGHRRCHIQAQRKMEEQQRKKVRFTLRIKSKNLVIRDDDNNNLIKSSSIGNPNDSSRRFFRCLVCDKDFPSQKSLCGHMRCHPDRDWRGVNPPSVTADNALASSSSSSSSSSSSEEQDNQNHNKSSSPSTSEESLSVPVDLSSSCSESSWLKKDMRGRKRIGEAEAAHIAALTLLDMHVFGNYRLPHRLPTREPTPEKAAVLPVEKRQKNVMKNHVAAGSSSSSPAGTKSLDNCKEKIEGSDGNEELNADMKLISLKKEKKNLNKKMKLAPEIIKSEEETMKQEEVKPSQSYVCDICNKSFSCFQALGGHKTKHRKNIVKSMKGKEVVEQRPEEEQKKEEDKLCINGALSGEEAAALISSEERLVISSNDNESNSNEEEVGEARQQSASGIRGFDLNVPFVLEDEATDL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g0484 507 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Acco05g0484 507 MobiDBLite consensus disorder prediction 1 47 - -
Acco05g0484 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Acco05g0484 507 MobiDBLite consensus disorder prediction 419 438 - -
Acco05g0484 507 SMART c2h2final6 390 412 IPR013087 -
Acco05g0484 507 SMART c2h2final6 83 105 IPR013087 -
Acco05g0484 507 SMART c2h2final6 158 180 IPR013087 -
Acco05g0484 507 MobiDBLite consensus disorder prediction 413 438 - -
Acco05g0484 507 MobiDBLite consensus disorder prediction 194 238 - -
Acco05g0484 507 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Acco05g0484 507 MobiDBLite consensus disorder prediction 188 238 - -
Acco05g0484 507 Pfam C2H2-type zinc finger 158 182 - -
Acco05g0484 507 Pfam C2H2-type zinc finger 83 105 - -
Acco05g0484 507 Pfam C2H2-type zinc finger 390 414 - -
Acco05g0484 507 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 33 499 IPR044653 GO:0003700
Acco05g0484 507 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Acco05g0484 507 Gene3D Classic Zinc Finger 83 180 - -
Acco05g0484 507 MobiDBLite consensus disorder prediction 1 55 - -
Acco05g0484 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Acco05g0484 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Acco05g0484 507 SUPERFAMILY beta-beta-alpha zinc fingers 156 412 IPR036236 -
Acco05g0484 507 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g0484 Acco-ChrAcco05 6270221 6271820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g0484 84 191 C2H2 Transcription Factor Family AT2G26940 36.937 1.06e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco05g0484 zf-C2H2_6 3e-09 CL0361